SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6681

Length: 1888 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6681

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0354 Predicted aminomethyltransferase related to GcvT	-	-	2.0e-22	28%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%
Blast2go	protein	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.1.2.1-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	small molecule metabolic process	GO:0044281	Biological Process	70%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	70%
Blast2go	aminomethyltransferase activity	GO:0004047	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	Glycine cleavage T-protein, N-terminal	IPR006222	-	-
Sma3	Glycine cleavage T-protein, C-terminal barrel	IPR013977	-	-
Sma3	YgfZ/GcvT conserved site	IPR017703	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6H5L6

Fln msg:

Fln protein: MLPWRLILAKALNSPKQGFTARFAGKTRAACNFHSSPGSEYHESSAGSTPLSERGPFVSRLKSRGVLRFDGPDAVKYLQGLVTNDLRRLEETPSDAGVSVPTPNQPVVFSGPIYTAFLTPQGRFLYDLFVYRPIRAEEKLDGTGSGPGGDPHQPALLADVDIHFLDELLDHLKKYRLRAKVEIQDVSKDMAAWQRFGRSLVDDSDVDKDAEGKSIGWGGGADFAGRAAAQSNGQGWRWFRDPRLASMGLRGLFLSDTVPPLVEADKEVDEQYYLLWRLEEGVPEGSTEIPKGEAIPLEYNLAGLNAISFEKGCYVGQESVARTHHRGVIRKRLLPVNFIHDNGEEVHQAVAPKSEIIEVNSGKKVGTVTTALGSRGLALLRLEAAFKNTSQLNVKGLENVNVKVIRPKWWPSEWGQEEEQATAVA*

Protein Length: 427

Fln nts: ATGGGGGGCATGCCAGCGGCACGTTCCATAACCTGGTTCCTGTTAAACGCCACTACGCCGATCCGTTGGGTAAAGCGCCCAGCTTAAAATGCACACACGTCGTGACCTTGGCTGTCACTCAACAGACACACATAAGCATTCGACCCACAGAACTCCAAACGCCTAATATTACCGGTTTAAATCCAGACTGCATAGC_-_ATGCTTCCGTGGAGGTTGATTTTGGCCAAAGCTTTAAATTCGCCCAAGCAAGGGTTTACAGCGCGGTTTGCAGGGAAAACCAGGGCAGCCTGCAATTTCCATTCGTCCCCAGGCTCAGAGTACCATGAATCTTCGGCGGGCTCGACTCCTCTAAGCGAGCGGGGGCCCTTCGTTTCCCGCCTCAAGAGCCGCGGGGTGCTGCGCTTCGACGGTCCGGACGCTGTAAAGTATCTCCAGGGCCTCGTCACTAATGATCTCCGACGGTTGGAGGAGACCCCTTCAGACGCCGGGGTCTCTGTGCCAACGCCGAACCAGCCTGTAGTCTTCAGCGGCCCAATCTATACGGCGTTTCTCACTCCCCAGGGAAGATTTCTGTATGACTTGTTCGTTTATCGCCCCATCCGGGCCGAGGAAAAGCTCGACGGGACTGGCTCTGGCCCGGGCGGGGATCCACATCAGCCTGCCCTGCTCGCTGACGTCGACATTCATTTCCTAGATGAGCTTCTTGACCACTTGAAGAAATATCGTTTGCGAGCAAAGGTGGAAATCCAGGATGTTTCAAAAGACATGGCAGCCTGGCAACGTTTTGGTCGTTCCTTGGTGGATGATTCTGATGTAGATAAAGATGCTGAAGGCAAAAGCATTGGTTGGGGTGGAGGTGCTGATTTTGCTGGCCGTGCTGCTGCACAAAGCAATGGTCAAGGATGGCGGTGGTTCAGGGATCCAAGATTGGCATCTATGGGATTAAGGGGCCTTTTCCTGTCAGATACTGTTCCACCGCTAGTAGAAGCTGATAAAGAAGTTGACGAGCAATATTACCTTTTATGGAGGTTAGAGGAAGGAGTACCGGAAGGTTCAACAGAAATTCCTAAAGGTGAAGCAATTCCACTCGAGTACAATTTAGCTGGCTTAAATGCTATCAGCTTTGAAAAGGGATGCTATGTTGGCCAAGAATCTGTGGCTCGAACGCACCACCGCGGTGTAATTCGCAAGCGTTTATTACCAGTCAACTTCATACATGATAATGGAGAAGAGGTTCATCAAGCAGTTGCACCTAAATCTGAGATAATTGAAGTTAATTCAGGCAAAAAGGTTGGTACAGTTACAACAGCTCTTGGATCTAGGGGTCTTGCTCTCTTGAGATTAGAAGCAGCGTTTAAAAATACTTCTCAGTTAAATGTCAAAGGCTTGGAGAATGTTAATGTTAAGGTCATAAGGCCAAAATGGTGGCCTAGTGAATGGGGTCAAGAAGAGGAACAAGCAACAGCAGTTGCATAG___ATCGGCTGCAATGTTGATAACTATTAAAGTCTTGTTTTCATTAACTGCATATCTCTCTCATTCTTGTTAGCATGTAATTAAGGTGGCTTTTGGATTTTTCAATACTCCTTTGCACATAAAAATAATCTTCTCTTAAATCCCTCTCGATTTTTTAATTCAAATCCTCTTCATTTCTGTTTCCCTCCACCCAGTTATCTCCTTTCCTTGAAGCCATGCACTTAATTGGAGATGTATAGCGGGAACTGTAAAAGGAATGCACAAGTGTTGAATTTATGGATGAAGAGCCTGTTTATGGATTTGATATTCATCCCTGGTCCAAGTTAATTACACGATATTTCATTTGTGCTTTCATGGGGAGTAACGTTGGCAGAGGTTTATAAGATTTATGTGGTTCCTGCAAGTACCCAGTAATAT

Fln Alignment:

Contig6681___SAGSTPLSERGPFVSRLKSRGVLRFDGPDAVKYLQGLVTNDLRRLEETPSDAGVSVPTPNQPVVFSGPIYTAFLTPQGRFLYDLFVYRPIRAEEKLDGTGSGPGGDPH-QPALLADVDIHFLDELLDHLKKYRLRAKVEIQDVSKDMAAWQRFGRSLVDDSDVDKDAEGKSIXXXXXXXXXXXXXXQSNGQGWRWFRDPRLASMGLRGLFLSDTVPPLVEADKEVDEQYYLLWRLEEGVPEGSTEIPKGEAIPLEYNLAGLNAISFEKGCYVGQESVARTHHRGVIRKRLLPVNFIHDNGEEVHQAVAPKSEIIEVNSGKKVGTVTTXXXXXXXXXXXXXXXFKNTSQLNVKGLENVNVKVIRPKWWPSEWGQEEEQATAVA
F6H5L6______________STHQTRFDHVGPMASLLKSRSVVRFRGPDTVKFLQGLLTNDVQRFCESPGEMTSTLVTPNVPFISDSPMYALMLTPQGRFLYDLFLYRPARASEKLDRTGSGPGSDPDGRLELLADVDATVLDELLERFNKYRLRADVVIENVAEEFSCWQRYGENLTEKFSSAEEPEAASVGWGAAVDPAGTSSSHGNSHGWQWFKDPRLDSLGFRGIFPSNTTPPLVEADKETDEKNYLLWRLEKGVAEGSTEILKGEAVPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLKFLDDSGKEMEQKVAPGSDVINAVSGKKAGTVTTALECRGLGLLRLNEALKGPSKLTIQGQEDVKVEAIRPEWWPTEWFQEYQQDTASA

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
282	18	81			0.999994
423	81	18			1.0
426	81		18		1.0
428		81	18		1.0
429	18			81	1.0
432	81			12	0.999943
433			81	18	1.0
437		87	12		0.999964
440		12	87		0.999964
767	86			4	0.999539
956	25			50	0.995533
959		50		50	1.0
960		50	50		1.0
962	33			66	0.997452
965		66	33		0.997452
968	66			33	0.997452
969			33	66	0.997452
974			33	66	0.997452
975		33		66	0.997452
1494		12		87	0.999964
1809	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain