SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6624

Length: 888 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6624

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana] gb\|AAM65873.1\| pore protein homolog [Arabidopsis thaliana] gb\|AEE83705.1\| Mitochondrial import inner membrane translocase subunit Tim17/Tim22/T	-	-	1.0e-35	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	mitochondrial import inner membrane translocase subunit tim17 tim22 tim23 family protein	-	-	1.4013e-45	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein transport	GO:0015031	Biological Process	1.4013e-45	73%
Blast2go	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	1.4013e-45	73%
Blast2go	plastid outer membrane	GO:0009527	Cellular Component	1.4013e-45	73%
Blast2go	mitochondrial inner membrane presequence translocase complex	GO:0005744	Cellular Component	1.4013e-45	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
370		22	77		0.999999
372		22	77		0.999999
373	77			22	0.999999
374		22	77		0.999999
376		77		22	0.999999
380		88		11	0.923564
382	88	11			0.923564
383	11		88		0.923564
384	88	11			0.923564
385	88			11	0.923564
387	11			88	0.923564
388	11	88			0.923564
389			11	88	0.923564
390			11	88	0.923564
391	11			88	0.923564
395		11	88		0.923564
397		88		11	0.923564
442	28	71			1.0
467	87		12		0.992554
469	87	12			0.992554
470			12	87	0.992554
471	87			12	0.992554
472		87	12		0.992554
476		12	87		0.992554
477	87			12	0.992554
478	87			12	0.992554
481	87	12			0.992554
482			87	12	0.992554
487		12	87		0.992554
488	87			12	0.992554
489		12	87		0.992554
490	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain