SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6616

Length: 1052 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6616 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	plastid-specific 30S ribosomal protein [Oryza sativa Indica Group]	-	-	6.0e-31	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	plastid-specific 30s ribosomal protein 3	-	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	89%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	89%
Blast2go	rRNA binding	GO:0019843	Molecular Function	89%
Blast2go	ribosome	GO:0005840	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein PSRP-3/Ycf65	IPR006924	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRX5

Fln msg:

Fln protein: MGGDKITGDGEDREGKEGTTMTMTIPSAFPLGSLSSRLLPAPCTIPSTCPCSPYPYARVIHFRPIGGIITSSVTAASGAITPRIRYGYGSLIQIPQMEKETGKRNRQCVILKAAQVETQSQPEPAQEEKEKGKVKVVVKTPRKQRVVLKFIWLEKNLGLALDQVVPGHGTISLSPYYFWPRKDAWEELKAKLESISWISQKRTIILLNQATDIINLWQQGGSNI*

Protein Length: 226

Fln nts: _-_ATGGGGGGTGATAAGATAACAGGAGATGGGGAAGATAGAGAAGGCAAGGAGGGGACGACAATGACAATGACGATACCGTCTGCATTTCCACTGGGAAGTCTTTCATCCAGACTTCTTCCAGCGCCATGCACCATTCCTTCTACTTGTCCCTGCTCTCCTTATCCTTATGCACGTGTAATTCATTTTAGGCCCATAGGAGGCATTATTACAAGCTCTGTTACTGCTGCGTCTGGTGCCATTACACCTAGAATTAGGTATGGATACGGGTCTCTCATCCAAATCCCACAAATGGAAAAGGAAACGGGAAAGAGAAATCGACAATGTGTGATTCTCAAAGCAGCCCAAGTGGAGACTCAGTCACAGCCAGAGCCTGCACAAGAAGAGAAGGAGAAGGGTAAGGTTAAGGTGGTGGTGAAGACTCCCAGGAAGCAGAGGGTTGTATTGAAGTTCATTTGGCTTGAGAAGAACCTAGGGCTTGCTCTAGATCAGGTGGTTCCTGGGCATGGGACTATTAGCCTAAGTCCTTATTACTTTTGGCCCAGGAAGGATGCATGGGAAGAACTCAAAGCCAAGCTGGAGAGCATATCCTGGATATCTCAAAAGCGCACAATAATTCTTCTTAACCAGGCGACGGATATCATTAACTTGTGGCAGCAAGGTGGAAGCAATATATAA___CGATTCAATTCAGATAGAGCAATGTATGTATGCACATGCTGTTTCTGACTATGATACTTTTTTTGCTAATCCATGGGGATTTTGAATCGATGATGTATTGCAAGGAGAAGCGACTTAACAGTGCACAGTCAATCCAAAACCCAGTGGGCTCTGCTTCTGACTAGCTTCATCTATGAAGCTGCAGTTAATTGTATTTTAATTTAAATTAAGGGCCCTCCAATCCTATAGTCACTATAAGCCAATCCAGTTCTAAGTTGACTTGGCTGTCTTATGTATTCTCTTGAGTCTTAGTTTTGCTATTTTGTATTTTGGAGGAAGAGGTTATTACCCTAAAATAATCCTCTTGAGTCTTAGTTTTGCTATTTTTTATTTTGGAG

Fln Alignment:

Contig6616___MTMTIPSAFPLGSLSSRLLXXXXXXXXXXXXXXXXXA---RVIHFRPIGGIITSSVTAASGAITPRIRYGYGSLIQIPQMEKETGKRNRQCVILKAAQVETQSQPEPAQXXXXXXXXXXXXXXXXXXXXVLKFIWLEKNLGLALDQVVPGHGTISLSPYYFWPRKDAWEELKAKLESISWISQKRTIILLNQATDIINLWQQGGSNI
A9NRX5______________MTMTITSAFALGSLSSRLLPSPCNIPSTCTCSPVSSSSYARAIHFRPVQAIISSSVAAASGAITPRI--GYGSLIQIPQTEKERGKKNQQCVVLKAAQVEALSEPEPALEEKEKGKVKVVVKTPRKQRVVLKFIWLEKNIGLALDQVVPGHGTISLSPYYFWPRKDAWEELKAKLESISWVSQKRTIILLNQATDIINLWQQVGSNI

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
197		83		16	0.994512
518	85		14		0.993533
569		85		14	0.993533
800		23		76	1.0
860		23		76	1.0
932	17	82			1.0
977		20	80		0.999996
986		10		90	0.90298
991	77	22			0.999999
992		22		77	0.999999
993		22		77	0.999999
994		22	77		0.999999
1017		25		75	0.996473
1018	75	25			0.996473
1019		25		75	0.996473
1021	25			75	0.996473
1026		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain