SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6611

Length: 2176 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene6611
GAGAATTTGTGAAAATTATTGGACAAAAAAATGTCAAGATTTAGGGGTGGAAGTTCAGATTCCGCCAGAAATTTTAGCAAATTATGGACAATTTTCCTCATCGTCGGGAGTTTCTGTGTTGGAATGCTCTTCACCAACAGAATGTGGAACATTCAAGAATCCAAGGATGTAAATAGACTTAATGGAGAGCAGACAGATCAATTTAACCTTGTTTCTGAAAGATGTAATCCTAAATCAGCAAAAATGGGATCTAAGGATATATTGGATGAGGTTTCAAAGACTCATAATGCTATCCAAACACTGGATAAGACAATCTCAAACTTGGAGATGGAGCTAGCAGCAGCAAGGGCAGCACATGAATCTTTATTGAGTGGTTCTCCTATTCTAGAAAATCCTGTTACTGAAAAACCAACTACCCGGCCAAAAGTTTTTATGGTCATTGGAATCAACACTGCTTTTAGTAGCCGAAAGCGCAGGGATTCTGTCCGTGAAACATGGATGCCACGAGGTGAAAAGCGAAAGAGAATGGAGGAGGAGAAGGGCATTATTGTTCGATTTGTGATCGGCCACAGTGTTACATCAGGTGGTATTTTGGATCGAGCAATTAATGCTGAAGACGCTCAACATGGGGACTTCATGAGGCTGGAACATGTTGAAGGATACCATGAATTGTCAGCTAAAACAAAGATATACTTCACCACTGCTGTTTCAAAATGGGATGCTGATTTCTATATAAAGGTTGATGATGATGTCCATGTAAATCTAGCAACACTTGGAGCAACGTTGGCAGCGCATAGGTCTAAGCCTCGTGTCTATATAGGATGCATGAAATCTGGTCCAGTTCTTTCACAATGGGGAGTGAGGTACCAGGAACCTGAGTACTGGAAATTTGGCGAGGATGGAAACAAGTACTTTAGGCATGCTACTGGTCAGCTGTATGCAATCTCGAAGGATCTGGCAACGTATATATCAATAAATGAAAAATACTCCATAAATATGCAAATGAGGATGTTTCCTTGGGATCTTGGTTTATTGGATTGGACGTGGAACATATTGATGATCGCCGATTATGCTGTGGAACCCCTCCAGATTGTGAATGGAAAGCCCAGGCTGGGAATATTTGTGTTGCCTCATTTGATTGGAGCTGCAGCGGTATTTGCAACTCTGCAGATAGAATCAAAGAAGTGCATCGACGATGTGGTGAAGGTGAAAATACCATATGGAACTTAGATTTTTAGTAAGATATATCGATTTTTCTGCCATGGTTGGCATGATACGATCATGCATATGATGCACTGTGGTTCAAAGAAGAGTTGTACTGTAAAATTCTTGACCAAGGCTGATGCTGAGATGTAATTGACACCTACTGTTCTCATGTTTGGCTAATTCAATCCTTTGCATATCTGCTTTATGAAAAGAAGAATATAACAGCCATCATGAGGCAAGGCTTGTATACTTCATCGCAGATCACTAGTACAAGTCACCGTCTGTACGACGAAAGGGATTGGCGACCCTCCAATTTTTTTCAGCTTTTGAAGCAATAAGACCGTCATAATATAAAATGTATTTTTTTCTCGTGTATTCTGATCTTGTAATGAGATCTTTTAGCATTTATGCAACTTATCCCCTCTCACCACATTGGTGTGTAAATCTTATTCCTTGCCGATTTAATTATATTTTGTCATCTATTCAGTAGGACTCGGGCTCGATCGACTATCTTTACAAATGGCTGATGATTCTTTCCAGTGCACAAAGTGTGGCTCTGCCTCGGTTCAACTTCTTCCTCCTTTTTCTGCTCGCTATGTTTCCGACCTTAAACATGGATTTTGGCAGCGTCTGTAGGTTAATCAGACCGCCTGAAATACCGGAGTCTGCAATGCTTCTGCCAGTCTTCCGGTCCATAGCATTATGGTTTACGATTGAGAACAAAGTGGCATTCAAGAATCACAATAGAGGAAGGAGTGGTGCCAAGTAAGTCAGCGATCATTTTGAAAAAGAATTCGTAGGCTGTTGCTGGCAGAGCTACATATGAGGTAGCTTGAACGACGTTAGTAGTAATCAGAAGATTTTAGAAACACAATATAAGGAATAATTCACTTTTGAATGGTTGAATTATTACATGTTTGATTTTCGAACTAACTACTTTCATTTTAATGTGTATTTTGTATTTGTTTCT

Ace file of the UniGene sp_v2.0_unigene6611 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative beta-1,3-galactosyltransferase 2 [Arabidopsis thaliana] gb\|AAK63859.1\|AF389287_1 At1g05170/YUP8H12_22 [Arabidopsis thaliana] gb\|AAB71461.1\| Similar to Sequence 10 from patent 5477002 (gb\|1253956) [Arabidopsis thaliana] gb\|AAM47315.1\| At1g05170/YU	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	galactosyltransferase family protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	78%
Blast2go	galactosyltransferase activity	GO:0008378	Molecular Function	78%
Blast2go	endomembrane system	GO:0012505	Cellular Component	78%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE09

Fln msg: Overlapping hits, possible frame ERROR between 1032 and 984, your sequence is longer than subject: 403 - 335

Fln protein: MSRFRGGSSDSARNFSKLWTIFLIVGSFCVGMLFTNRMWNIQESKDVNRLNGEQTDQFNLVSERCNPKSAKMGSKDILDEVSKTHNAIQTLDKTISNLEMELAAARAAHESLLSGSPILENPVTEKPTTRPKVFMVIGINTAFSSRKRRDSVRETWMPRGEKRKRMEEEKGIIVRFVIGHSVTSGGILDRAINAEDAQHGDFMRLEHVEGYHELSAKTKIYFTTAVSKWDADFYIKVDDDVHVNLATLGATLAAHRSKPRVYIGCMKSGPVLSQWGVRYQEPEYWKFGEDGNKYFRHATGQLYAISKDLATYISINExxxxxxxxxxxxxxxxxxGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICNSADRIKEVHRRCGEGENTIWNLDF*

Protein Length: 404

Fln nts: GAGAATTTGTGAAAATTATTGGACAAAAAA_-_ATGTCAAGATTTAGGGGTGGAAGTTCAGATTCCGCCAGAAATTTTAGCAAATTATGGACAATTTTCCTCATCGTCGGGAGTTTCTGTGTTGGAATGCTCTTCACCAACAGAATGTGGAACATTCAAGAATCCAAGGATGTAAATAGACTTAATGGAGAGCAGACAGATCAATTTAACCTTGTTTCTGAAAGATGTAATCCTAAATCAGCAAAAATGGGATCTAAGGATATATTGGATGAGGTTTCgAAGACTCATAATGCTATCCAAACACTGGATAAGACAATCTCAAACTTGGAGATGGAGCTAGCAGCAGCAAGGGCAGCACATGAATCTTTATTGAGTGGTTCTCCTATTCTAGAAAATCCTGTTACTGAAAAACCAACTACtCGGCCAAAAGTTTTTATGGTCATTGGAATCAACACTGCTTTTAGTAGCCGAAAGCGCAGGGATTCTGTCCGTGAAACATGGATGCCACGAGGTGAAAAGCGAAAGAGAATGGAGGAGGAGAAGGGCATTATTGTTCGATTTGTGATCGGCCACAGTGTTACATCAGGTGGTATTTTGGATCGAGCAATTAATGCTGAAGACGCTCAACATGGGGACTTCATGAGGCTGGAACATGTTGAAGGATACCATGAATTGTCAGCTAAAACAAAGATATACTTCACCACTGCTGTTTCAAAATGGGATGCTGATTTCTATATAAAGGTTGATGATGATGTCCATGTAAATCTAGCAACACTTGGAGCAACGTTGGCAGCGCATAGGTCTAAGCCTCGTGTCTATATAGGATGCATGAAATCTGGTCCAGTTCTTTCACAATGGGGAGTGAGGTACCAGGAACCTGAGTACTGGAAATTTGGCGAGGATGGAAACAAGTACTTTAGGCATGCTACTGGTCAGCTGTATGCAATCTCGAAGGATCTGGCAACGTATATATCAATAAATGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGATTGGACGTGGAACATATTGATGATCGCCGATTATGCTGTGGAACCCCTCCAGATTGTGAATGGAAAGCCCAGGCTGGGAATATTTGTGTTGCCTCATTTGATTGGAGCTGCAGCGGTATTTGCAACTCTGCAGATAGAATCAAAGAAGTGCATCGACGATGTGGTGAAGGTGAAAATACCATATGGAACTTAGATTTTTAG___TAAGATATATCGATTTTTCTGCCATGGTTGGCATGATACGATCATGCATATGATGCACTGTGGTTCAAAGAAGAGTTGTACTGTAAAATTCTTGACCAAGGCTGATGCTGAGATGTAATTGACACCTACTGTTCTCATGTTTGGCTAATTCAATCCTTTGCATATCTGCTTTATGAAAAGAAGAATATAACAGCCATCATGAGGCAAGGCTTGTATACTTCATCGCAGATCACTAGTACAAGTCACCGTCTGTACGACGAAAGGGATTGGCGACCCTCCAATTTTTTTCAGCTTTTGAAGCAATAAGACCGTCATAATATAAAATGTATTTTTTTCTCGTGTATTCTGATCTTGTAATGAGATCTTTTAGCATTTATGCAACTTATCCCCTCTCACCACATTGGTGTGTAAATCTTATTCCTTGCCGATTTAATTATATTTTGTCATCTATTCAGTAGGACTCGGGCTCGATCGACTATCTTTACAAATGGCTGATGATTCTTTCCAGTGCACAAAGTGTGGCTCTGCCTCGGTTCAACTTCTTCCTCCTTTTTCTGCTCGCTATGTTTCCGACCTTAAACATGGATTTTGGCAGCGTCTGTAGGTTAATCAGACCGCCTGAAATACCGGAGTCTGCAATGCTTCTGCCAGTCTTCCGGTCCATAGCATTATGGTTTACGATTGAGAACAAAGTGGCATTCAAGAATCACAATAGAGGAAGGAGTGGTGCCAAGTAAGTCAGCGATCATTTTGAAAAAGAATTCGTAGGCTGTTGCTGGCAGAGCTACATATGAGGTAGCTTGAACGACGTTAGTAGTAATCAGAAGATTTTAGAAACACAATATAAGGAATAATTCACTTTTGAATGGTTGAATTATTACATGTTTGATTTTCGAACTAACTACTTTCATTTTAATGTGTATTTTGTATTTGTTTCT

Fln Alignment:

Contig6611___TLDKTISNLEMELAAARAAHESLLSGSPILENPVTEKPTTRPKVFMVIGINTAFSSRKRRDSVRETWMPXXXXXXXXXXXXGIIVRFVIGHSVTSGGILDRAINAEDAQHGDFMRLEHVEGYHELSAKTKIYFTTAVSKWDADFYIKVDDDVHVNLATLGATLAAHRSKPRVYIGCMKSGPVLSQWGVRYQEPEYWKFGEDGNKYFRHATGQLYAISKDLATYISIN---xxxxxxxxxxxxxxxxxxxDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICNSADRIKEVHRRCGEGENTIWN
D5AE09______________SLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGRGSEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGPKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDAEDAQHNDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRYRSKPRIYIGCMKSGPVLAQKGVKYHEPEYWKFGEEGNRYFRHATGQIYAISRDLATYISINSPIxxxxxxxxxxxxxxxxxxxDVEHIDERSMCCGTPPDCEWKAQAGNVCVASFDWTCSGICKSVERLKEVHRTCSEGDGAVWS

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1312	33		66		0.997452
1431		66		33	0.997452
1569	57		42		1.0
1764	66		33		1.0
1791	20			80	0.995493
1792	20			80	0.995493
1795		80		20	0.995493
1812		75		25	0.996473
1874		66		33	0.997452
1875	33			66	0.997452
1876		33		66	0.997452
1879		75		25	0.996473
1907		33		66	1.0
1923	66		33		0.997452
1943			33	66	0.997452
1944	33		33		0.997753
1973	66		33		0.997452
2014		33		66	0.997452
2104	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain