SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6566

Length: 4016 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene6566
AGATCAGAGGAATGAGAATCCTGGAAAATGATGACTTTCCAGAGTCTATAGTGCCAGTATTTTCTGACCTGTGGAGAGAAGAAGAAGCTGCTAAGGAAGCCGAAGCTGATAAGGAAGCCGAAGCTGCTAAAGAAGTTGAAGCTTCTAAAGAAGCTGTAAAAGAGAAATCTGAGGCAGTAGAATCTGAACCCAAAGCTGAGCTCAAGTCACAGGACAAAAATAAATCTCAAAGCAAATCTAAGGATATGGTTGTTAAACCAGCTAAATTGGTGCGCATGGCTAACTTATGTGTTATTTCTGGCCATTCTGTTAATGGAGTTGCTGAAATCCACAGTGAAATTGTGAAGAAAGAGGTTTTCAGTGATTTTTATGAGATGTGGCCTGAAAAGTTTCAAAATAAGACCAACGGCGTAACTCCCAGGCGATGGATTCGATTTTGCAACCCTGAATTGAGTAAAGTTATCACTAAGTGGCTTGGAACAGAAGATTGGATTCTTAAGACTGAACTTTTAGCAGAGCTTCGAAAGTTTGCTGATAATGTAGAGCTACAAGAAGAATGGCGGGCAGCAAAAAGGGCCAACAAAATGAAGCTTGTCTCATATATTAGAGAAAAAACAGGATATATAATCAGTCCAGATGCCATGTTTGACGTACAGGTTAAACGTATCCATGAGTACAAGCGTCAACTCTTAAATATTTTGGGAGTCGTATATCGATACAAGAAGATGAAGGAAATGACTCCAGAGGAAAGGAGAGCAAAGTTTGTCCCTCGTGTATGCATATTTGGAGGCAAAGCGTTTGCAACATATGTGCAGGCAAAAAGGATAGTGAAACTGATAACAGATGTTGGAGTTACAATCAATCACGACTCAGAGATAGGAGACTTGCTAAAGGTTGTATTTATACCGGATTATAATGTAAGTGTTGCGGAAACGCTCATTCCCGCAAGCGAACTCTCTCAACATATTAGCACTGCTGGAATGGAAGCCAGTGGAACCAGCAACATGAAATTTTCCATGAATGGATGTGTCTTAATTGGCACATTGGATGGTGCCAATGTTGAAATACGTGAGGAAGTTGGAGAAGAAAATTTCTTTCTGTTCGGTGCTAGAGCACATGAAATTGCCGGACTGAGGAAAGAGAGAGTAGAAGGCAAGTTCAAACCGGACCCAAGGTTTGAAGAGGCAAAAGACTACATCAAGAGCGGGGTCTTTGGAAAATACAACTACACGCCTTTGCTCGATTCTCTTGAAGGGAGTGAGGGGTATGGTCGAGGTGATTACTTCCTTGTTGGCAAAGACTTTCCAGCATATATTGAATGCCAAGAGAGCGTGGATGCTGCATATGGAGATCAAGAGAAATGGACAAGGATGTCTATCCTAAACACGGCTGGTTCATACAAATTCAGCAGTGACCGAACGATACATGAATACGCAAAAGACATATGGGATGCAAAGCAAGTTCAATTACCCTAGAATTATTCCCCTTTTTCCTTATCGACACTAGTTGTTTAATAAGTGCTGTAATGGGGTAGTCACCTTAAACAAGTAATCATGTGTCTATTTCATTGAACACGAACATGCTTCTCTTGTCAGTGAGTTGTCAAAGATCCAAAAAGCCAGATATTTACAAATCCTGGTCTGGACTCTGGTTTCACGGATTCTAATCCAGTGCCAATCTCTAGATTCACTGAAATTTTGGTAAAGAATAAAGCATGTAATAGAAATAATCACAAAGGGAACCTCCAGTATTTTCCTGTAAACAGATACGTATAAAGTTTTAAATGTATTTATAAAATAAATCTTATAGCTGTTAAATTCACTAAGTTAATTGGCAAAGCCAAGATGACAACCAAAAGCGACAAACAAAATGGTATTGTAAAGTTGCTATAGTGGGCTATTTGGCCTTTCACTCGCTAGCAACTTCGTTACAAACAAGAGACAACTCTCCACTTGTTTAATGATGTCGGTTTAAGCGGGCAATAATTCATTTCCAAGCCAAAAGATCTGGACAGAATCAAATCTAGAGACACATTTTACGAGACAACCAGTGCCAACTTAGAAGGGATTCCTGGCAATACAAAAAGGCCAGACATTGTCCCATAGAAAGCATCCGTATGGTCATCACATGTTATGTTTTTTGCCTGTAACAAACTGTCCATGAAGAAAGAGAGATTGGAATAACTGCCAGAATGCTTACAAATTTTGAAACAAACTTACAAGCATAGAACATGGCTCTTTTGTTCAGGAGAAAACAAAATATATTAGTACCACAATATATAGATAATGTGTACTATAACTCGCATCAGACGAGAATATCAACTTGATCAGAAGAGCTCACTGGTAACGAAGAAGCTTTCTCAATCAAGCTAATGTGATCAGAAATAACAGTAGAAAACTTGTCATCTAACTTGTGCAGTAATCTCTTTTGCATGTGCCCGCAGAAAACATGGATCAATTTTCAATGATAGTCAGACAACTACAGATCGAACCAACCTGCTAAAACTCTATGCAGCAATATACCACCTTAACCTGCAAACATGCTATGCAGCAGACACCTCCTTGTAAGACTACCCACACTGGGTGCTTTTGCATATATATGTCATTTTTCTAATGCCATATCTCACAAGGAATTTCAAGAGAGAAGTGTCAAATGATACTTTAACAATCTTTTATTGGGTTTGCAGAGTTGCCATTTGTCTCGAGAGAAGTCTTTGCTATGCTAGCTTCTAGCTCGTCCAATTCATCAAGGTCCAATTCATCATCATCTTCAGCTAGTATTTGCTCCTCTTCTTCAGCTGTAACCCCAGAAGTTGAGGTTTCTGCCGTTGAAGGACTTGGGTTCTTCTTCACCTCCTTGGCCCGATCTTCTTCATCTTCCCTATTGTACTTTTCGTAAGCCTCGGCATCATCAACAAACAAGCTTGCATCCGAAAGGAATAATTCACGCCCACTCATGCGATCATTTTTCGCTCTCTCAGCTCTCTTGGCAGCAAGCTCAGCTTCCTTCTGGTCTGTCTTTTTCTTCTTCCATTCATAAAATAAGTCACCATTAAGGGGAGTCGTAGTTTTTGTTTGTCGTCTCTGATTTTCAATCTCTTCTTCAATTGAAATCTTCTGCGTCTCTTCGTCTAACAAAGCCTTCATTTGAGACTTTAATACATAACCAGGAGGCAGAGCATGTCTATAGTGACATTCTTTTCCTCCATTGGGACAAGTCCAAAACCAACCATATTGTTTTTTTTCCACAGCTTCCAAAAAGTATTTACATACAATATCCGTTGGCTTGTTCTGGTTATATTCCGTTTTCTTGGATTCTACAACCTTTTCAAGCGTCTCCAGGTCCCAATCGTCCATAGTTTCTTCATCTCGCTTATCACTATATATGTCAATCTTTTCACCCTTTCTCTGTACATTCAAGTCGTGGGAGAATTTGCACTTAAAACCCTTGCCACATTGCCCAGCCTTAAAGAATTCACATACTATAGATTTGGGATCAACACCGGGTGGAACTTTCGGCTGACTGACAGCAACTTTAAATAGGTCGCTCAGTTCCTTCTCCCTCTTCTTCTCCTCTTCCTCTTTTGCTTGGCTGTATTAAGTTTGGGGTCGGCTTTGGGCTGCACCGATTGCTTAAGGCTCTGGACATATTTCTGAACATTTTTGCTCTTGTTCTTGTTCTTGAGGCCGAAGGTCTTGTCCTCGACGACCTTCGCTTTTTTTGGCTACATCGGCCTTGGACTGCTGCTTGGGAGGCATGGTTATGCTCAGAAGCCTGAAATCATCCAAAATAAGCCGGCGAAGAGCCGAAAAAAGAGGAAATTTCGGCCTGCCCCTTCAACGGGCAGATGGATCGAGGAATTGGATAGAGCAGACGAGGGTTTGGATTTGAAGATCGGGATAACGTTTACCCTTACCCTGCTGCTTTATTTCTCTGGTACAAAAATATTTTTCTTCGTGGTCTGTCTCAGGTTAGCGAGTGGGTTAAAAATTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene6566 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphorylase n=1 Tax=Picea sitchensis RepID=A9NUV6_PICSI	-	-	0.0	95%
FL-Next	sp=Phosphorylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 35	IPR000811	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUV6

Fln msg: your sequence is longer than subject: 488 - 399

Fln protein: MRILENDDFPESIVPVFSDLWREEEAAKEAEAVKEAEAAKEVEASKEAVKEKSEAVESEPKAELKSQDKNKSQSKSKDMVVKPAKLVRMANLCVISGHSVNGVAEIHSEIVKKEVFSDFYEMWPEKFQNKTNGVTPRRWIRFCNPELSKVITKWLGTEDWILKTELLAELRKFADNVELQEEWRAAKRANKMKLVSYIREKTGYIISPDAMFDVQVKRIHEYKRQLLNILGVVYRYKKMKEMTPEERRAKFVPRVCIFGGKAFATYVQAKRIVKLITDVGVTINHDSEIGDLLKVVFIPDYNVSVAETLIPASELSQHISTAGMEASGTSNMKFSMNGCVLIGTLDGANVEIREEVGEENFFLFGARAHEIAGLRKERVEGKFKPDPRFEEAKDYIKSGVFGKYNYTPLLDSLEGSEGYGRGDYFLVGKDFPAYIECQESVDAAYGDQEKWTRMSILNTAGSYKFSSDRTIHEYAKDIWDAKQVQLP*

Protein Length: 489

Fln nts: AGATCAGAGGA_-_ATGAGAATCCTGGAAAATGATGACTTTCCAGAGTCTATAGTGCCAGTATTTTCTGACCTGTGGAGAGAAGAAGAAGCTGCTAAGGAAGCCGAAGCTGtTAAGGAAGCCGAAGCTGCTAAAGAAGTTGAAGCTTCTAAAGAAGCTGTAAAAGAGAAATCTGAGGCAGTAGAATCTGAACCCAAAGCTGAGCTCAAGTCACAGGACAAAAATAAATCTCAAAGCAAATCTAAGGATATGGTTGTTAAACCAGCTAAATTGGTGCGCATGGCTAACTTATGTGTTATTTCTGGCCATTCTGTTAATGGAGTTGCTGAAATCCACAGTGAAATTGTGAAGAAAGAGGTTTTCAGTGATTTTTATGAGATGTGGCCTGAAAAGTTTCAAAATAAGACCAACGGCGTAACTCCCAGGCGATGGATTCGATTTTGCAACCCTGAATTGAGTAAAGTTATCACTAAGTGGCTTGGAACAGAAGATTGGATTCTTAAGACTGAACTTTTAGCAGAGCTTCGAAAGTTTGCTGATAATGTAGAGCTACAAGAAGAATGGCGGGCAGCAAAAAGGGCCAACAAAATGAAGCTTGTCTCATATATTAGAGAAAAAACAGGATATATAATCAGTCCAGATGCCATGTTTGACGTACAGGTTAAACGTATCCATGAGTACAAGCGTCAACTCTTAAATATTTTGGGAGTCGTATATCGATACAAGAAGATGAAGGAAATGACTCCAGAGGAAAGGAGAGCAAAGTTTGTCCCTCGTGTATGCATATTTGGAGGCAAAGCGTTTGCAACATATGTGCAGGCAAAAAGGATAGTGAAACTGATAACAGATGTTGGAGTTACAATCAATCACGACTCAGAGATAGGAGACTTGCTAAAGGTTGTATTTATACCGGATTATAATGTAAGTGTTGCGGAAACGCTCATTCCCGCAAGCGAACTCTCTCAACATATTAGCACTGCTGGAATGGAAGCCAGTGGAACCAGCAACATGAAATTTTCCATGAATGGATGTGTCTTAATTGGCACATTGGATGGTGCCAATGTTGAAATACGTGAGGAAGTTGGAGAAGAAAATTTCTTTCTGTTCGGTGCTAGAGCACATGAAATTGCCGGACTGAGGAAAGAGAGAGTAGAAGGCAAGTTCAAACCGGACCCAAGGTTTGAAGAGGCAAAAGACTACATCAAGAGCGGGGTCTTTGGAAAATACAACTACACGCCTTTGCTCGATTCTCTTGAAGGGAGTGAGGGGTATGGTCGAGGTGATTACTTCCTTGTTGGCAAAGACTTTCCAGCATATATTGAATGCCAAGAGAGCGTGGATGCTGCATATGGAGATCAAGAGAAATGGACAAGGATGTCTATCCTAAACACGGCTGGTTCATACAAATTCAGCAGTGACCGAACGATACATGAATACGCAAAAGACATATGGGATGCAAAGCAAGTTCAATTACCCTAG___AATTATTCCCCTTTTTCCTTATCGACACTAGTTGTTTAATAAGTGCTGTAATGGGGTAGTCACCTTAAACAAGTAATCATGTGTCTATTTCATTGAACACGAACATGCTTCTCTTGTCAGTGAGTTGTCAAAGATCCAAAAAGCCAGATATTTACAAATCCTGGTCTGGACTCTGGTTTCACGGATTCTAATCCAGTGCCAATCTCTAGATTCACTGAAATTTTGGTAAAGAATAAAGCATGTAATAGAAATAATCACAAAGGGAACCTCCAGTATTTTCCTGTAAACAGATACGTATAAAGTTTTAAATGTATTTATAAAATAAATCTTATAGCTGTTAAATTCACTAAGTTAATTGGCAAAGCCAAGATGACAACCAAAAGCGACAAACAAAATGGTATTGTAAAGTTGCTATAGTGGGCTATTTGGCCTTTCACTCGCTAGCAACTTCGTTACAAACAAGAGACAACTCTCCACTTGTTTAATGATGTCGGTTTAAGCGGGCAATAATTCATTTCCAAGCCAAAAGATCTGGACAGAATCAAATCTAGAGACACATTTTACGAGACAACCAGTGCCAACTTAGAAGGGATTCCTGGCAATACAAAAAGGCCAGACATTGTCCCATAGAAAGCATCCGTATGGTCATCACATGTTATGTTTTTTGCCTGTAACAAACTGTCCATGAAGAAAGAGAGATTGGAATAACTGCCAGAATGCTTACAAATTTTGAAACAAACTTACAAGCATAGAACATGGCTCTTTTGTTCAGGAGAAAACAAAATATATTAGTACCACAATATATAGATAATGTGTACTATAACTCGCATCAGACGAGAATATCAACTTGATCAGAAGAGCTCACTGGTAACGAAGAAGCTTTCTCAATCAAGCTAATGTGATCAGAAATAACAGTAGAAAACTTGTCATCTAACTTGTGCAGTAATCTCTTTTGCATGTGCCCGCAGAAAACATGGATCAATTTTCAATGATAGTCAGACAACTACAGATCGAACCAACCTGCTAAAACTCTATGCAGCAATATACCACCTTAACCTGCAAACATGCTATGCAGCAGACACCTCCTTGTAAGACTACCCACACTGGGTGCTTTTGCATATATATGTCATTTTTCTAATGCCATATCTCACAAGGAATTTCAAGAGAGAAGTGTCAAATGATACTTTAACAATCTTTTATTGGGTTTGCAGAGTTGCCATTTGTCTCGAGAGAAGTCTTTGCTATGCTAGCTTCTAGCTCGTCCAATTCATCAAGGTCCAATTCATCATCATCTTCAGCTAGTATTTGCTCCTCTTCTTCAGCTGTAACCCCAGAAGTTGAGGTTTCTGCCGTTGAAGGACTTGGGTTCTTCTTCACCTCCTTGGCCCGATCTTCTTCATCTTCCCTATTGTACTTTTCGTAAGCCTCGGCATCATCAACAAACAAGCTTGCATCCGAAAGGAATAATTCACGCCCACTCATGCGATCATTTTTCGCTCTCTCAGCTCTCTTGGCAGCAAGCTCAGCTTCCTTCTGGTCTGTCTTTTTCTTCTTCCATTCATAAAATAAGTCACCATTAAGGGGAGTCGTAGTTTTTGTTTGTCGTCTCTGATTTTCAATCTCTTCTTCAATTGAAATCTTCTGCGTCTCTTCGTCTAACAAAGCCTTCATTTGAGACTTTAATACATAACCAGGAGGCAGAGCATGTCTATAGTGACATTCTTTTCCTCCATTGGGACAAGTCCAAAACCAACCATATTGTTTTTTTTCCACAGCTTCCAAAAAGTATTTACATACAATATCCGTTGGCTTGTTCTGGTTATATTCCGTTTTCTTGGATTCTACAACCTTTTCAAGCGTCTCCAGGTCCCAATCGTCCATAGTTTCTTCATCTCGCTTATCACTATATATGTCAATCTTTTCACCCTTTCTCTGTACATTCAAGTCGTGGGAGAATTTGCACTTAAAACCCTTGCCACATTGCCCAGCCTTAAAGAATTCACATACTATAGATTTGGGATCAACACCGGGTGGAACTTTCGGCTGACTGACAGCAACTTTAAATAGGTCGCTCAGTTCCTTCTCCCTCTTCTTCTCCTCTTCCTCTTTTGCTTGGCTGTATTAAGTTTGGGGTCGGCTTTGGGCTGCACCGATTGCTTAAGGCTCTGGACATATTTCTGAACATTTTTGCTCTTGTTCTTGTTCTTGAGGCCGAAGGTCTTGTCCTCGACGACCTTCGCTTTTTTTGGCTACATCGGCCTTGGACTGCTGCTTGGGAGGCATGGTTATGCTCAGAAGCCTGAAATCATCCAAAATAAGCCGGCGAAGAGCCGAAAAAAGAGGAAATTTCGGCCTGCCCCTTCAACGGGCAGATGGATCGAGGAATTGGATAGAGCAGACGAGGGTTTGGATTTGAAGATCGGGATAACGTTTACCCTTACCCTGCTGCTTTATTTCTCTGGTACAAAAATATTTTTCTTCGTGGTCTGTCTCAGGTTAGCGAGTGGGTTAAAAATTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig6566___MANLCVISGHSVNGVAEIHSEIVKKEVFSDFYEMWPEKFQNKTNGVTPRRWIRFCNPELSKVITKWLGTEDWILKTELLAELRKFADNVELQEEWRAAKRANKMKLVSYIREKTGYIISPDAMFDVQVKRIHEYKRQLLNILGVVYRYKKMKEMTPEERRAKFVPRVCIFGGKAFATYVQAKRIVKLITDVGVTINHDSEIGDLLKVVFIPDYNVSVAETLIPASELSQHISTAGMEASGTSNMKFSMNGCVLIGTLDGANVEIREEVGEENFFLFGARAHEIAGLRKERVEGKFKPDPRFEEAKDYIKSGVFGKYNYTPLLDSLEGSEGYGRGDYFLVGKDFPAYIECQESVDAAYGDQEKWTRMSILNTAGSYKFSSDRTIHEYAKDIWDAKQVQLP
A9NUV6______________MANICVIAGHSVNGVAEIHSEIVKKEVFSDFYEMWPEKFQNKTNGVTPRRWIRFCNPELSKVITKWLGTEDWVLKTELLAELRKFADNVDLQEEWRAAKRANKLKLVSYIREKTGYIISPDAMFDVQVKRIHEYKRQLLNILGVIYRYKKMKEMTPEERRAKFVPRVCIFGGKAFATYVQAKRIVKLITDVGVTINHDTEIGDLLKIVFIPDYNVSVAETLIPASELSQHISTAGMEASGTSNMKFSMNGCVLIGTLDGANVEIREEVGEENFFLFGARAHEIAGLRKERAEGKFKPDPRFEEAKDYIKSGVFGKYDYRPLIDSLEGNEGYGRGDYFLVGKDFPAYVECQERVDAAYGDQEKWTRMSILNTAGSYKFSSDRTIHEYAKDIWGVKQVKLP

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
141	11			88	0.923564
142		88		11	0.923564
144			11	88	0.923564
145		88	11		0.923564
146			11	88	0.923564
370	16			83	0.994512
807		66		33	0.997452
3622		13		86	1.0
3623	4		9	86	0.999642
3714	83		16		0.999991
3722	80	20			0.999996
3725			20	80	0.999996
3726	77		22		0.999999
3727	77			22	0.999999
3731	80		20		0.999996
3734	80	20			0.999996
3791			40	60	1.0
3802		20		80	0.995493
3803		20		60	0.99255
3804		20	80		0.995493
3867		20		80	0.995493
3868		20		80	0.995493
3870	20			80	0.995493
3909	66	33			0.997452
3910		33	66		0.997452
3913			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain