SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6562

Length: 734 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6562

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox-leucine zipper protein HOX19 n=3 Tax=Oryza sativa RepID=HOX19_ORYSJ	-	-	6.0e-22	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	protein	-	-	9.41453e-23	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	9.41453e-23	77%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	9.41453e-23	77%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	9.41453e-23	77%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	9.41453e-23	77%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	9.41453e-23	77%
Blast2go	nucleus	GO:0005634	Cellular Component	9.41453e-23	77%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	HD-ZIP protein, N-terminal	IPR006712	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
415		90		10	0.90298
416		10		90	0.90298
417	80		20		0.999996
419		90	10		0.90298
421	80	20			0.999996
425		10	90		0.90298
426	10		90		0.90298
429		90	10		0.90298
600	44		55		1.0
627	44			55	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain