SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6530

Length: 1396 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6530

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ERF transcription factor n=1 Tax=Solanum tuberosum RepID=A4ZX83_SOLTU	-	-	1.0e-27	37%
FL-Next	sp=Ethylene-responsive transcription factor 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	0.0	44%
Blast2go	ethylene-responsive transcription factor 1a	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q84XB3

Fln msg: your sequence is longer than subject: 316 - 244

Fln protein: MNVLDQIRQHLLGKSDGSPSFCTGSPAESCLTENYASPNSWNASEELDSGFVQSALVSDSVEEEQTASENQPCGGSGGTRFSRPVLSITVPRRECFEWERRSASWGADSRNFVTACCPASIRRCLSCDWGKLPLDENDSQDMFLYGVLKEATQKGWTPLTPKEIKNTDIKQINPLQETGREVSEKDKKSGGRHFRGVRRRPWGKYAAEIRDSARQGSRVWLGTFETAEEAAFAYDRAAYKMRGTKALLNFPLDLVAKSMDSLSEDESCCRKRKLNGQAERGEEKRHHHGPNFEECGVESQESIVVEGGEQKRFTR*

Protein Length: 317

Fln nts: CGTCGTGACCTTGGATGGCACACAGACCTCAATTTGTGAGCGGATTAGGTCCCTAGGAATTAATAATTCTTAATTCCTAAGGTTTTGGTTTCCCACATTGCAGAA_-_ATGAACGTCCTCGATCAGATTCGGCAACATCTGCTCGGGAAATCTGACGGCTCGCCTTCGTTCTGCACCGGATCACCGGCGGAGTCATGCTTGACGGAAAATTACGCGTCTCCTAACAGCTGGAACGCCTCAGAGGAACTGGACTCCGGCTTTGTCCAGAGCGCGCTGGTAAGCGATTCCGTTGAAGAAGAACAGACGGCGTCGGAGAATCAGCCATGCGGTGGCAGCGGCGGCACCAGGTTTTCCCGTCCGGTGCTCTCCATCACCGTTCCGCGGAGGGAATGCTTCGAGTGGGAGAGGCGTTCCGCTAGCTGGGGCGCGGATTCAAGGAATTTTGTCACCGCTTGTTGCCCGGCGTCCATCAGACGGTGCCTTTCCTGCGACTGGGGGAAGCTTCCGTTAGATGAAAACGATTCGCAGGACATGTTTCTATATGGGGTTCTCAAGGAAGCGACGCAGAAGGGTTGGACGCCGTTAACTCCAAAGGAAATCAAGAACACTGACATCAAACAGATAAATCCCCTGCAGGAGACGGGACGTGAGGTGTCGGAAAAGGACAAGAAGAGCGGGGGAAGGCATTTCCGGGGTGTGAGACGGCGGCCTTGGGGCAAATATGCGGCGGAGATAAGGGACTCTGCGCGGCAGGGATCTAGAGTGTGGCTCGGTACCTTCGAGACGGCGGAGGAAGCCGCCTTTGCATATGATCGCGCCGCTTACAAGATGAGGGGCACTAAGGCCTTGCTTAATTTCCCCCTTGATTTGGTTGCCAAGTCCATGGATTCCCTCAGTGAGGATGAGAGTTGCTGTAGAAAGAGGAAATTGAATGGGCAAGCAGAGAGGGGAGAAGAAAAGAGGCACCACCATGGGCCGAATTTCGAAGAGTGTGGGGTGGAATCTCAGGAATCGATCGTGGTGGAGGGTGGAGAGCAGAAGAGATTTACACGATGA___ATGAATATTCGTGAGCGTGGGGTGGATTCTGAAGAGAACCGATCGCGGTGGAGGATGCAGAGCAGAAGTGGATATTCCTCATTTGGCTGAGGGATTCGGTGAAGTTGACTTGTAAATATTATGAATATATTTCATATAAAGTTATCCACATTAATTCTTTCTTCCTTCCACCTTTAAAGTGATTCTTCTTGGAATGCACATTGTGATTTGGTAAAGAGATTTGTCTCTTAAACCCTATTAGCAATCGCAATACAAAGATTATTTTTATTATTTTTAACTTAAAAGTGTAATCTGCCCCCCCTAAGTCTGCAATCATTTTGGCTGTAGACCGAATTCGAGTCAA

Fln Alignment:

Contig6530___ASIRRCLSCDWGKLPLDENDSQDMFLYGVLKEATQKGWTP--LTPKEIKNTDIKQINPLQETGRE---VSEKDKKSGGRHFRGVRRRPWGKYAAEIRDSARQGSRVWLGXXXXXXXXXXXXXXXXXKMRGTKALLNFP-------------------LDLVAKSMDSLSEDESCCRKRKLNGQAERGEEKRHHHGPNFEECGVE
Q84XB3______________SSLMPCLTESWGDLPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKRRLSESASSSVSSASESGSPKRRRK-GVAAKQAELEVESRGPNVMKVGCQ

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
565			83	16	0.994512
566		83		16	0.994512
779	16			83	0.994512
781		83	16		0.994512
898		10		90	0.90298
900	90			10	0.90298
901		10	90		0.90298
907		10	90		0.90298
908	90	10			0.90298
909			90	10	0.90298
911			10	90	0.90298
918		10	90		0.90298
919	90			10	0.90298
948			88	11	0.923564
972	66		33		1.0
1029	40		60		1.0
1037	10	90			0.90298
1123	88			11	0.923564
1125		10	90		0.90298
1127		10	90		0.90298
1128	10		90		0.90298
1191	85	14			0.993533
1294	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain