SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6499

Length: 1247 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6499 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Methyltransferase family protein [Arabidopsis thaliana] gb\|AAO42060.1\| unknown protein [Arabidopsis thaliana] gb\|AAV97796.1\| At1g54650 [Arabidopsis thaliana] gb\|AEE33130.1\| Methyltransferase family protein [Arabidopsis thaliana]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	47%
Blast2go	methyltransferase family protein	-	-	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyltransferase type 12	IPR013217	-	0.0	-
Sma3	Methyltransferase, METTL2, predicted	IPR017280	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S7I9

Fln msg: your sequence is longer than subject: 380 - 332

Fln protein: MIILLFEIEGRARPTLPLSYDQTRTCNLIFNLRREMEHTNNGAEIAVEEGDDRDTSYYCEDFNWEDLRDEMETKEHQREGFINLGDEATECCSNKEAWQSFHQRHLRGTFFKERKYLLKEFPELLQADGSNKILEVGCGNGSSVLPVLRANGSVVVYACDCSMVALERAREMVDAATGVAGTCRFHAFYCDLSLESFPSWLCCVTCQESFQAQAKDHQKGNDHPVTGFLVTEGHNTISHGGQNKETSDKEHMQCCIGGVDIVTLIFTLSSIPLKRMPHLIKECLSILKPGGMLFFRDYGLYDMTMLRFPPTQKIGEYQYIRGDGTFSYYFSLEILRDIFTKSGFVEIECRFCCVQLLNRKKGQKMRRVWVHGKFQKPLA*

Protein Length: 381

Fln nts: ATGGGGAATGACTCGATGAATTGATAGAAATTTTTTGA_-_ATGATAATTTTGCTCTTTGAGATTGAAGGCCGAGCTAGACCGACACTGCCGCTGAGTTACGACCAGACTCGAACCTGCAATCTCATATTCAATTTGCGGAGAGAAATGGAGCACACAAACAATGGCGCGGAAATTGCAGTCGAGGAGGGAGATGACAGAGATACTTCGTATTATTGCGAGGATTTTAATTGGGAAGATCTCAGAGATGAAATGGAAACGAAAGAACATCAACGTGAAGGATTTATTAACTTGGGTGATGAGGCGACAGAGTGCTGCAGCAACAAGGAGGCATGGCAGAGCTTTCATCAACGCCATTTGAGAGGAACTTTCTTCAAGGAACGGAAGTATTTGCTGAAGGAATTTCCCGAGCTGTTGCAAGCGGATGGCAGTAATAAGATCCTGGAGGTTGGCTGTGGCAATGGCAGTTCTGTGCTTCCGGTTTTACGAGCAAATGGCAGTGTTGTTGTCTATGCATGCGATTGTAGCATGGTTGCTTTGGAGAGAGCTCGAGAAATGGTGGATGCTGCAACTGGCGTCGCTGGAACATGCCGATTTCATGCTTTCTATTGTGATTTGTCTCTTGAAAGTTTTCCTAGTTGGCTGTGCTGTGTAACTTGTCAAGAATCATTCCAAGCTCAAGCAAAGGATCACCAAAAAGGAAATGATCATCCTGTTACTGGATTTCTTGTAACTGAGGGTCACAATACCATTTCTCATGGCGGACAAAACAAAGAAACTTCTGATAAGGAGCATATGCAATGTTGCATTGGTGGAGTGGATATTGTGACATTGATATTCACTTTGTCTTCAATTCCCCTTAAAAGAATGCCACATCTGATTAAAGAATGCTTATCAATTCTGAAGCCTGGTGGGATGTTATTCTTCAGGGACTATGGACTGTATGACATGACAATGCTGCGGTTTCCCCCTACCCAAAAAATTGGGGAATATCAATATATACGTGGTGATGGCACATTTTCATATTATTTTTCTCTGGAAATTTTGAGGGATATTTTTACAAAATCCGGGTTCGTTGAGATAGAGTGTCGGTTCTGTTGTGTACAACTGCTTAATCGGAAGAAGGGTCAGAAAATGCGCCGTGTGTGGGTTCACGGGAAATTCCAGAAGCCGCTGGCTTAG___TTGCCAACCAGCAGAAGCTTCAAACTCTGCACCCTATAGGTAATACCACGAAGATGATGATATAGACTA

Fln Alignment:

Contig6499___GDDRDTSYYCEDFNWEDLRDEMETKEHQREGFINLGDEAT---ECCSNKEAWQSFHQRHLRGTFFKERKYLLKEFPELLQADGSNKILEVGCGNGSSVLPVLRANGSVVVYACDCSMVALERAREMVDAATGVAGTCRFHAFYCDLSLESFPSWLCCVTCQESFQAQAKDHQKGNDHPVTGFLVTEGHNTISHGGQNKETSDKEHMQCCIGGVDIVTLIFTLSSIPLKRMPHLIKECLSILKPGGMLFFRDYGLYDMTMLRFPPTQKIGEYQYIRGDGTFSYYFSLEILRDIFTKSGFVEIECRFCCVQLLNRKKGQKMRRVWVHGKFQKPL
B9S7I9______________GEEEEANYFSKDFEWETLKQEIENNPSFSYHFLPFVSSSLAHGQESGDSNAWQRFHVRHSTGRFFKERRYLLKEFPELVSCRDFSKVLEVGCGNGSSVIPILRGNKRIFVYACDCSNETLDRAQEIVNASNIVSVQGRFKTFYSDFAFTGFPKWLLCDSCR-LILPHKQEECLSSDVKERSIIDVNGSGSLEESG------------CCIGGVDFVTLIFTLSAVSLKMMPTAILECLSVLKPGGLLLFRDYGLYDMTMLRFEANKRVGFREYMRADGTRSYFFSLDTVRDLFVGAGFIELELEYCCVKSVNRRKGKSMRRVWIHGKFQKPV

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
751	83			16	0.994512
752		83	16		0.994512
754		83	16		0.994512
757	16	83			0.994512
761			16	83	0.994512
762		16		83	0.994512
763		16	83		0.994512
764	20	80			0.995493
765	20			80	0.995493
766		80	20		0.995493
769	80	20			0.995493
771	80	20			0.995493
772	80		20		0.995493
773	20	80			0.995493
825	25		75		0.996473
894		33		66	0.997452
935		80	20		0.995493
944	20			80	0.995493
945	20	80			0.995493
946			20	80	0.995493
950	20		80		0.995493
952		80	20		0.995493
953	20			80	0.995493
955	75		25		0.996473
1136			25	75	0.996473
1143		25	75		0.996473
1144		25		75	0.996473
1145	25			75	0.996473
1146	25	75			0.996473
1152	33			66	0.997452
1153		33	66		0.997452
1155	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain