SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6486

Length: 1227 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6486 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Ginkgo biloba RepID=Q0R5D7_GINBI	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	2-c-methyl-d-erythritol 4-phosphate cytidyltransferase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.7.6-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	terpenoid biosynthetic process	GO:0016114	Biological Process	85%
Blast2go	isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	GO:0019288	Biological Process	85%
Blast2go	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	GO:0050518	Molecular Function	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQM4

Fln msg:

Fln protein: MAFSRYSTPISAPATLAGSSKLLPSSSPWNNVRNNRLVLGTSIPNCLRLRGGRAHGNFHVHVVESKSRLRAKAVSDKDADDISSQTNELVPKKSVSVILLAGGKGKRMGASMPKQYLPLLGQPIALYSFRIFSLMPEVKEIVVVCDPSYRDIFEEAQNSVTVYLKFASPGKERQDSVFNGLQEIDQMTELVCVHDSARPLVLNEDVKKVLNDAWVHGAAVLGVPVKATIKEASNDNFVTRTLNRQTLWEMHTPQVIKPSLLRKGFEVVYREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLLAERILNQR*

Protein Length: 319

Fln nts: CCAGGGAGAGGTGATGAAATGAACTGGCAGCAGC_-_ATGGCCTTCTCACGATACAGTACCCCTATCTCTGCTCCTGCGACGCTTGCTGGCTCGTCGAAGCTGCTTCCAAGTTCATCTCCATGGAACAATGTCAGAAATAACAGATTAGTATTGGGAACTTCCATCCCAAATTGCTTACGTTTACGAGGAGGGCGTGCTCATGGCAATTTTCATGTTCATGTGGTGGAGTCGAAGTCACGTTTAAGGGCGAAGGCTGTTTCAGACAAGGACGCCGATGATATATCTTCTCAGACTAATGAGCTAGTTCCAAAGAAAAGCGTCTCTGTTATTCTACTAGCTGGAGGCAAAGGAAAGCGAATGGGGGCAAGCATGCCCAAACAGTATCTTCCATTATTAGGGCAGCCTATTGCACTTTATAGTTTCCGAATTTTCTCCCTCATGCCTGAAGTGAAGGAAATCGTGGTTGTTTGTGATCCTTCATACAGAGACATATTCGAAGAAGCTCAGAATAGTGTGACGGTATATCTTAAGTTTGCATCTCCAGGCAAAGAGAGACAAGATTCAGTGTTTAATGGGCTTCAGGAAATTGATCAAATGACAGAGCTTGTGTGTGTGCACGATTCTGCACGCCCTCTTGTTTTAAACGAAGATGTGAAAAAGGTTTTGAATGATGCATGGGTTCATGGTGCAGCAGTGCTTGGAGTTCCTGTCAAGGCCACCATCAAGGAGGCAAGTAATGACAATTTTGTGACGAGGACATTAAATCGACAGACACTCTGGGAAATGCATACACCCCAGGTTATTAAACCAAGCTTGCTTCGGAAAGGATTTGAGGTTGTGTATAGGGAAGGATTGGAGGTTACAGATGATGTATCCATCGTGGAGCATCTTAAGCACCCTGTCTACATTACTGAAGGTTCTTATACAAATATTAAGGTGACTACACCAGATGATTTATTACTTGCAGAAAGAATTTTGAACCAAAGATGA___GCTAGAAAGAGCCATTGAATCAATCCATTTTCTGTTGCTCTACAAGGTTCCCTTAGAAGTTAAGTGCGAGGTTTGTTTATTTCGGATGTTAGTGCGAGTTCAGAGAAAGTTCCCCCATCGGTATCTCATCATTTTACAGGGAAATTATTGTCTGTTAGTCAGGTCTTTTTCTTCCTTGCTTGTAAAATTTGAGATCATGAATTTGCAGCTTTTTATTTAAAAAAATATTCTAAATTTGC

Fln Alignment:

Contig6486___MAFSRYSTPIS--APATLAGSSKLLPSSSPWNNVRNNRLVLGTSIPNCLRLRGGRAHGNFHVHVVESKSRLRAKAVSDKDADDISSQTNELVPKKSVSVILLAGGKGKRMGASMPKQYLPLLGQPIALYSFRIFSLMPEVKEIVVVCDPSYRDIFEEAQNSVTVYLKFASPGKERQDSVFNGLQEIDQMTELVCVHDSARPLVLNEDVKKVLNDAWVHGAAVLGVPVKATIKEASNDNFVTRTLNRQTLWEMHTPQVIKPSLLRKGFEVVYREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLLAERILNQR
C0PQM4______________MAFSRYCTPISTPAPALFAYSPKLPQTSSPWHNVRNSRLVLGTSIPNCLRLRGGRGRGDCHVHVVESKSRLRARAVLDKDADDISSQANELVPKKSVSVILLAGGKGKRMGANIPKQYLPLLGQPIALYSFHIFSLMSEVKEIVVVCDPSYRDIFEEARNSMTVYLKFASPGKERQDSVFNGLQEVDQTTELVCVHDSARPLVLSGNVKKVLKDAWVHGAAVLGVPVKATIKEASNDSFVTRTLNRQTLWEMQTPQVIKPSLLRKGFEVVHREGLEVTDDVSIVEHLKHPVYITEGSYSNIKVTTPDDILLAERILNQR

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
718		90	10		0.90298
794	33		66		1.0
812	20			80	0.995493
815	80		20		0.995493
816	80			20	0.995493
826		20	80		0.995493
827	20		80		0.995493
828		80		20	0.995493
956		25		75	0.996473
958	25		75		0.996473
981		75		25	0.996473
1051		75		25	0.996473
1062			25	75	0.996473
1096		33		66	1.0
1110			33	66	0.997452
1119	33		33		0.997753
1121	33			66	0.997452
1122			33	66	0.997452
1123		33	66		0.997452
1124		33	66		0.997452
1131		66		33	0.997452
1132		33		66	0.997452
1133	33			66	0.997452
1211		33		66	1.0
1216	80	20			0.995493
1219		25		75	0.996473
1220	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain