SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6449

Length: 1871 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6449 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	COP9 signalosome complex subunit 4 [Arabidopsis thaliana] sp\|Q8L5U0.2\|CSN4_ARATH RecName: Full=COP9 signalosome complex subunit 4; Short=AtS4; Short=Signalosome subunit 4; AltName: Full=Constitutive photomorphogenesis protein 8; AltName: Full=Protein FUSC	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	cop9 signalosome complex subunit 4	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	photomorphogenesis	GO:0009640	Biological Process	91%
Blast2go	G2 phase of mitotic cell cycle	GO:0000085	Biological Process	91%
Blast2go	cullin deneddylation	GO:0010388	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	signalosome	GO:0008180	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR01

Fln msg:

Fln protein: MAGEIESALHSAAAITDQRQKIEQYKLILASIFSSNNVQNAKAFIDHMVSDDVPLVASRQLLQIFAQELGQLEPEAHKEVAHYALAQIQPRVVSFEEQVSIMREKLAELFETEQQWSKAAQMLSGIDLDSGIRMLDDAYKLSKCVQIARLYLEDDDAVNAETFIKKASFLVSNRHDEALNLEYKVCYARILDMKRKFLEAALRYYEISQIEKRQIGDKWIDEDALQQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLSDNSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPEKAEKIASRMICEDRMRGSIDQVEAVIHFEDDIEELQQWDQQIVGLCQALNDVLDSMAKKGLTIAV*

Protein Length: 403

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTTTCGAAGAGCCCAGGTACCCTCAGACAGTCGAACCAGAAAAACGGAGTGAAACAAGAAAAACGGAGTCGGGGAAAATCGATCTGCTAACAGAGTCAACAACGCAAATTCAAGGACG_-_ATGGCAGGCGAAATAGAGAGCGCTCTGCACAGCGCTGCTGCCATTACTGATCAGAGGCAGAAGATAGAGCAGTACAAGCTTATTCTCGCCTCCATTTTCTCCAGCAATAATGTTCAAAATGCGAAGGCTTTCATTGATCATATGGTGTCCGACGATGTGCCGCTGGTGGCTTCGAGGCAACTGCTGCAGATATTTGCGCAGGAGTTAGGGCAGTTAGAGCCCGAGGCTCACAAGGAGGTTGCCCACTATGCTTTGGCTCAAATTCAACCCAGGGTTGTTTCCTTCGAAGAACAGGTATCCATCATGCGGGAGAAGCTTGCTGAATTATTTGAGACTGAACAACAATGGTCAAAAGCAGCTCAAATGCTCAGTGGGATTGACTTAGATTCTGGCATAAGGATGCTTGATGATGCATACAAACTATCAAAGTGTGTCCAGATTGCTCGTTTATACTTGGAGGATGATGATGCTGTTAATGCAGAGACATTTATAAAAAAGGCTTCCTTTTTAGTGAGCAATAGGCATGACGAAGCATTAAATTTAGAATATAAGGTTTGTTATGCGCGCATTTTGGATATGAAACGGAAATTTCTGGAAGCTGCACTTCGTTACTATGAGATATCACAGATTGAAAAGCGCCAAATTGGAGACAAGTGGATAGATGAGGATGCACTCCAACAAGCACTTAGTGCTGCTGTGACATGCACTATTCTTGCTGCTGCTGGGCCCCAACGCTCCAGAGTGCTTGCTACACTTTACAAGGATGAAAGATGTTCCAAACTAAAGATCTACCCAATTTTGCAGAAGGTTTATCTAGAAAGAATTCTTAGGAAGCCAGAAATTGATGCATTTGCTGAAGAACTCAAACCCCATCAGAAAGCTCTCCTATCAGACAACTCAACTGTTCTGGATCGTGCTATGATTGAGCATAATCTTCTGAGTGCAAGCAAACTTTATACAAATATAAGCTTTGAAGAGCTGGGCACATTGCTTGGCATTGCTCCTGAAAAGGCTGAGAAAATAGCTTCACGAATGATTTGTGAGGACCGCATGAGGGGTTCAATTGATCAGGTTGAGGCAGTCATACACTTTGAGGATGATATAGAAGAGCTGCAGCAGTGGGACCAACAAATTGTAGGCCTATGTCAAGCGCTGAATGATGTCTTGGATAGCATGGCTAAGAAAGGGCTGACTATAGCAGTGTAA___GAGAAAATTAGTGTGATGGGAAGATTCTTCAAGGGAATAACTGAATCACAGTATTATTTAATTTTCTTGGCTCCATTGGTGGTTGATACGTTCATTGTCTTTTAGATGAACTGACGCACGGTGGTGCTTTTTTTCCTGCTTATGATACGCTCTTTTGTAGCCAGTTTATGCTGAAAACAAGAAAGCATGGTGTAAGTTTGGAATAAATTGTCAAATTCAGAACAATTTTCTTGGCTATGTTTGTGGTTTAAACATTCTTGGTTTTTGAGATGAAGTGAAGGCCCAGTAGTGGCTTTTCTTTCGGATATGACAACTTTTTGCCTGTTTTTTTCTGAAAACAAGCATGTGTGGTGTAAGCTTGGAATGAACTGGCAAATTCGGAACAGATGACATGAGTTGGATATCATGAGACAAATAGAACCTCATTAAGTCACTAGCAAATTTGAAATATTTTTGTAAGCTGTTTGAACAAGTACAAATATAGGATAAATGCAACAGTTATTATGCTGTGAAAAGTTAC

Fln Alignment:

Contig6449___MAGEIESALHSAAAITDQRQKIEQYKLILASIFSSNNVQNAKAFIDHMVSDDVPLVASRQLLQIFAQELGQLEPEAHKEVAHYALAQIQPRVVSFEEQVSIMREKLAELFETEQQWSKAAQMLSGIDLDSGIRMLDDAYKLSKCVQIARLYLEDDDAVNAETFIKKASFLVSNRHDEALNLEYKVCYARILDMKRKFLEAALRYYEISQIEKRQIGDKWIDEDALQQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLSDNSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPEKAEKIASRMICEDRMRGSIDQVEAVIHFEDDIEELQQWDQQIVGLCQALNDVLDSMAKKGLTIAV
B8LR01______________MAGEIEGALQSAAAITDQRQKIEQYKLILASIFSSNNVQNAKAFIDHMVSDDVPLVASRQLLQIFAQELGQLEPDAHKEIAHYALAQIQPRVVSFEEQVSIIREKLAELFETEQQWSKAAQMLSGIDLDSGIRMLDDTYKLSKCVQIARLYLEDDDAVNAEIFIKKASFLVSGSHDEALNLEYKVCYARILDMKRKFLEAALRYYEISQIEKRQIGDKWIDEDALQQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPEKAEKIASRMICEDRMRGSIDQVEAVIHFEDDIEELQQWDQQIVGLCQALNDVLDSMARKGLTIAV

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
83	40		60		1.0
392	90		10		0.90298
738	91		8		0.999807
1230	9			72	0.999994
1598	96		3		0.993591
1736	95		5		0.997749
1738		5		95	0.997749
1739	5			95	0.997749
1742		5	95		0.997749
1743	5			95	0.997749
1744	5			95	0.997749
1746			5	95	0.997749
1748		12	87		1.0
1751			5	94	0.997984
1752	5	94			0.997984
1753		5		94	0.997984
1757	91		8		1.0
1762	79	20			1.0
1773		84		15	1.0
1808		10	90		0.90298
1809		10	90		0.90298
1810	10			90	0.90298
1821		11	77		0.968132
1822	77	22			0.999999
1823		22	77		0.999999
1824		22	77		0.999999
1825	22	11	66		0.999999
1827	50	16	33		1.0
1846	66		33		0.997452
1847	66	33			0.997452
1848	33	33	33		0.997753
1849		33		66	0.997452
1850		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain