SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6444

Length: 1869 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6444 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SE49_RICCO	-	-	58%
FL-Next	sp=tRNA dimethylallyltransferase 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	trna dimethylallyltransferase 9	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA dimethylallyltransferase.	EC:2.5.1.75	-	0.0	68%

Source	KEGGs	Term	Identity
Blast2go	Zeatin biosynthesis	00908	68%
Blast2go	Biosynthesis of plant hormones	01070	68%
Blast2go	Metabolic pathways	01100	68%
Blast2go	Biosynthesis of secondary metabolites	01110	68%

Source	GOs	Term	Type	Identity
Blast2go	cytokinin biosynthetic process	GO:0009691	Biological Process	68%
Blast2go	tRNA processing	GO:0008033	Biological Process	68%
Blast2go	ATP binding	GO:0005524	Molecular Function	68%
Blast2go	mitochondrion	GO:0005739	Cellular Component	68%
Blast2go	tRNA dimethylallyltransferase activity	GO:0052381	Biological Process	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	tRNA isopentenyltransferase	IPR002627	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	tRNA delta(2)-isopentenylpyrophosphate transferase	IPR018022	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C5J6

Fln msg: Overlapping hits, possible frame ERROR between 567 and 555,

Fln protein: MLLHGRYVHASISENICVWYGGCSFRASLLLVSSVNPFWMTNANSMRFETMSWSSQVKHKKPKVIVISGPTGVGKSRLALQLAKRIGGEIISADSVQVYRGLDVGSAKTLIGDRQDIPHYLLDILHPTEEYSAGKYFDAAREATKDVLHRGHVPIVVGGSGLxxxxxxYGKPDVPETSPEIVSDVNVELRTLQSNGDWDTAVQLLLKAGDSTACNVERNDWYRIRRGLEIIKAAGVPRTSFPLPYDALKGQVASRITVSCSDSSDAEAENMQSSLTELDYDFLCFFLSVKRTDLYQRIDQRCEEMLTGSNGILAEASWLLDMGILPNTTCASRAIGYRQAMEYLFRCRQERGVSSEKEFYAFLSEFQTASRNFAKRQLTWFRNEPLYQWLDASQSLEKLVNFVVDTYRDSADASLHQSLTVNKINSSKELKDLERYRTQNRYFVSSNDCAPILEWIRLTQSGKEVT*

Protein Length: 468

Fln nts: CAATCTACAAATTCCAGAAACTCGCTCCCAGACGACATTGATTTTTCCATTTAAGTTTCATACGAA_-_ATGCTTCTCCATGGAAGGTATGTCCATGCATCCATATCTGAGAATATATGTGTATGGTATGGAGGTTGTTCGTTCCGGGCAAGCCTTCTACTAGTATCCAGCGTAAATCCTTTTTGGATGACAAATGCCAACTCGATGAGATTCGAAACCATGTCCTGGTCCAGCCAAGTGAAACACAAGAAGCCCAAGGTGATTGTAATATCAGGTCCCACGGGCGTCGGTAAAAGCAGACTCGCATTGCAATTGGCCAAGAGAATAGGCGGTGAAATCATCAGTGCTGATTCCGTGCAGGTTTACAGGGGTTTAGATGTTGGATCAGCAAAAACTCTTATTGGAGATCGTCAGGATATACCGCACTACTTACTCGACATTTTACATCCCACTGAAGAGTATTCCGCTGGCAAATACTTTGATGCTGCTAGAGAAGCCACGAAAGATGTTCTTCATAGAGGGCATGTACCAATAGTTGTTGGTGGTAGTGGGTTGxxxxxxxxxxxxxxxxxxTATGGCAAGCCGGATGTGCCAGAAACATCTCCTGAAATTGTCTCTGATGTGAACGTGGAGCTTAGAACACTCCAGAGCAATGGTGACTGGGATACAGCTGTGCAGCTTCTTCTGAAAGCAGGTGATTCCACTGCTTGTAATGTGGAGCGCAATGATTGGTACCGCATTCGTCGTGGCCTTGAAATCATTAAGGCTGCTGGAGTTCCTCGAACTTCATTTCCTCTACCATATGATGCTCTCAAAGGACAAGTAGCCTCAAGAATAACAGTTTCCTGCAGTGATAGCTCTGATGCAGAAGCTGAAAACATGCAGAGTTCCTTGACAGAATTGGACTATGACTTTCTCTGCTTTTTTCTTTCAGTTAAAAGGACAGATCTTTATCAGAGAATTGATCAGCGGTGTGAGGAGATGCTTACAGGGAGCAATGGGATTTTGGCTGAAGCCTCTTGGCTCTTGGATATGGGAATTCTTCCTAATACAACTTGCGCATCTCGTGCAATTGGTTATCGACAAGCTATGGAATATTTGTTCAGGTGCAGACAAGAAAGAGGTGTCAGTTCTGAGAAGGAGTTCTATGCATTTCTCTCTGAATTTCAAACGGCGTCCAGGAATTTCGCAAAGCGACAACTAACATGGTTTCGTAATGAACCACTATATCAATGGCTTGATGCTTCACAGTCATTGGAAAAACTGGTAAATTTTGTTGTGGATACATATCGTGATTCTGCTGACGCGTCCCTTCACCAATCACTTACAGTTAATAAAATAAATAGCAGCAAGGAGTTAAAAGACTTGGAGCGCTATCGAACTCAAAACAGGTACTTTGTCAGTTCAAATGATTGTGCTCCTATTTTAGAATGGATCCGGTTGACCCAAAGTGGGAAAGAAGTAACCTAG___CATGCTCCCCTCGATCAACTTACTGCCATCTATAAAGTAACTTACATATCTATAGCTCTCCTGTGGCCATTATAGCTATGTTCTTTTCCGAGTGCTAAACATGATTTTCCTCTGGAGACCTTCAGAAATTTGGTCAACAAATGCAAGCTTCTCTATATGTTTTGTTTGTTTCTCATTAATGATTATTTTTTCATGAAGTGATCCGACCTTACATAAGATAGGGCCACCTTTCCCTGAGAAGCACATTAAGATGAATCCAGTCAGATTTGTTCACTTCTTTGTACTCCATTCTTTCAAGGACTAAGATGAATCCCATTTACAATGCTTTCTCATTAGGAAACTTCTATCTAATATGTTCTATTGATGTGTTACAAATTATTATAATGATTAACATCAGCAATTG

Fln Alignment:

Contig6444___MSWSSQVKHKKPKVIVISGPTGVGKSRLALQLAKRIGGEIISADSVQVYRGLDVGSAKTLIGDRQDIPHYLLDILHPTEEYSAGKYFDAAREATKDVLHRGHVPIVVGGSGLYxxxxLYGKPDVPETSPEIVSDVNVELRTLQSNGDWDTAVQLLLKAGDSTACNVERNDWYRIRRGLEIIKAAGVPRTSFPLPYDALK-GQVASRITVSCSDSSDAEAENMQSSLTELDYDFLCFFLSVKRTDLYQRIDQRCEEMLTGSNGILAEASWLLDMGILPNTTCASRAIGYRQAMEYLFRCRQERGVSSEKEFYAFLSEFQTASRNFAKRQLTWFRNEPLYQWLDASQSLEKLVNFVVDTYRDSAD-ASLHQSLTVNK-INSSKELKDLERYRTQNRYFVSSNDCAPILEWIR
Q9C5J6______________LNGNKKKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEIISADSVQVYKGLDVGSAKPSDSDRKVVPHHLIDILHPSQDYSVGQFYDDGRQATKDILNRGRVPIVTGGTGLYxxxxMYGKPDVPKPSPEVIAEAHDMLVGFQTEYNWDAAVELVVNAGDPKASSLPRNDWYRLRRSLEILKSTGSPPSSFRIPYDSFRVNLVAPDADDFLEDGSSADI-SIQNIETDLDYDFLCFFLSSPRVALYRSIDFRCEDMLSGPNGVLSEARWLLDLGLLPNSNPATRAIGYRQAMEYLLQCRRYEGESSPREFYAFLNKFQTASRNFAKRQMTWFRCEPMYHWLNASKPLDSILQCIYDAYESEAEMVEIPESLRMSKDVRDSREASELKGYRSKNRHFVRREDCSSVLEWIR

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1019	75		25		0.996473
1031	25		75		0.996473
1135		80		20	0.995493
1255	20	80			0.995493
1310		75	25		0.996473
1313	75		25		0.996473
1315	75		25		0.996473
1316	25	75			0.996473
1319			25	75	0.996473
1321		20	80		0.995493
1322	20			80	0.995493
1324	80		20		0.995493
1330	80		20		0.995493
1333		80	20		0.995493
1449	33		66		0.997452
1485		33		66	0.997452
1537	75		25		0.996473
1569		75		25	0.996473
1602		75		25	0.996473
1630	20		80		0.995493
1657		80	20		0.995493
1670	20			80	0.995493
1674	80			20	0.995493
1682	25		75		0.996473
1693		25		75	0.996473
1771			33	66	0.997452
1773			33	66	0.997452
1775		66	33		0.997452
1776	33			66	0.997452
1780	66	33			0.997452
1781		33		66	0.997452
1783	33			66	0.997452
1792		33	66		0.997452
1796	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain