SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6441

Length: 1694 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6441

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gb\|AAG40344.1\|AF324992_1 AT3g62110 [Arabidopsis thaliana] gb\|AAN31866.1\| unknown protein [Arabidopsis thaliana] gb\|AEE80311.1\| glycoside hydrolase	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	probable polygalacturonase-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	0.0	78%

Source	KEGGs	Term	Type	Identity
Blast2go	Pentose and glucuronate interconversions	00040		78%
Blast2go	Starch and sucrose metabolism	00500		78%
Blast2go	Metabolic pathways	01100		78%
Blast2go	Galacturan 1,4-alpha-galacturonidase.	EC:3.2.1.67	-	78%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	78%
Blast2go	Starch and sucrose metabolism	00500	78%
Blast2go	Metabolic pathways	01100	78%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	78%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	78%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	78%
Blast2go	galacturan 1,4-alpha-galacturonidase activity	GO:0047911	Molecular Function	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: your sequence is shorter than subject: 350 - 472

Fln protein: AVILGSKDSTHWPVIDALPSYGRGRELPGGRHSGLITAFNVTDVVITGENGTIDGQGAVWWDSYHNHTLKYTRPHLIEVISSTDIVISNLTFLNSPFWNIHPVYCSNVHIHNLTILAPSHSPNTDGIDPDSSNDVCIEDCYMSIGDDLISIKSGWDQYGISFGRPSSNIIIRRVTGETPTSAGLAFGSEMSGGIIDVHVENLHVYNSRLGIRLKTAPGRGGFVKNVFISNMTMKNVQIAFDFTGSYGDHPDGGYDPNAFPDIDRLSFNDIVGDGIMIAGNIEGIQEAPFRDICLSNIYLNVTSESPWNCSKVNGFSESVYPQPCAELQSPIPNDSSVCPSYFTSSGEYL*

Protein Length: 351

Fln nts: ATGCAGTAATTCTTGGATCAAAGGACTCTACACATTGGCCTGTGATTGATGCCTTGCCATCGTATGGTCGAGGCAGGGAACTACCTGGTGGAAGGCATAGCGGCCTTATAACTGCATTCAATGTTACAGATGTTGTTATAACAGGTGAAAATGGAACTATTGATGGACAAGGAGCAGTTTGGTGGGATTCGTACCATAATCATACTCTAAAATATACTCGTCCCCACCTGATTGAGGTGATAAGCTCGACTGATATTGTCATTTCAAATCTGACATTCTTGAATTCGCCATTTTGGAATATACATCCAGTGTACTGCAGCAATGTGCACATTCATAATCTAACAATCCTTGCTCCGTCTCACTCACCTAATACGGATGGAATTGATCCAGATTCAAGCAATGATGTCTGCATTGAGGACTGCTACATGAGCATTGGCGATGATCTCATCTCAATCAAAAGTGGCTGGGATCAGTATGGCATATCCTTTGGGCGTCCTAGCTCCAATATCATTATTCGCCGTGTTACTGGAGAAACACCCACAAGTGCTGGCCTTGCATTTGGAAGTGAAATGTCTGGTGGCATCATAGATGTGCATGTCGAAAACTTACATGTGTACAATTCAAGATTGGGTATCAGGCTAAAAACAGCTCCAGGCAGAGGTGGTTTTGTTAAGAACGTTTTCATATCCAACATGACAATGAAGAATGTGCAAATTGCATTTGATTTTACAGGATCCTACGGTGATCATCCTGATGGTGGCTATGATCCAAATGCCTTCCCAGACATAGATAGGTTAAGTTTTAATGATATTGTGGGTGATGGTATCATGATTGCAGGTAACATTGAAGGAATTCAAGAAGCTCCATTTAGAGACATTTGCCTCTCAAATATTTATTTGAATGTTACCTCAGAATCTCCATGGAACTGTTCAAAAGTAAATGGCTTCTCAGAGTCAGTTTATCCCCAGCCATGTGCAGAGCTTCAAAGTCCAATACCTAATGACTCATCTGTTTGCCCTTCTTATTTCACTAGTTCAGGAGAATACCTGTAA___GCAAAGTACAGATATTACTTCTGTTGCTTTTGTCCTTTTAATGCCAATGCCCATTCATCTCTGCAAAGCTTTTTGTACTATGGCCAGTTATAAGTGATATCATCCATACCAATCACAATTATTGAACTGTTTACCACATTCTTCATTATTTTTATATAATAAACTTCCACTCTTCCCTTAGAATGAAACACCACTATTTTTACTAGACTGTCCTTCCACTGGAGGTCTCTGCGGCAAAGGCTTCCACTGCCTGTCAAATATGATGATACAAAATGTTGTCTATGCTATCTCAACAAAGTTAGAAGCCTGCAAAAGTTTATGAACAATCACTTCTAACAGGTTGGTTGCCTGTAAAGAATTGAGAAGTATTTCTTCTTGGGGATCAGTAGTTGGTAAGGTTGACAATTTTCTCATGTTGGGATATTTTGCATATTCATTTCTTTCTTGCTCTCATGCAAGAGATAGCAGCATAAATTTAGCTGTGGACTTTGCAAATTAATTGTAATTTTTCTCATCGGCCTTGATGCCATCCTGTACAGCTCCATTCATATTTTAATACCCGAGAGGTGAATTTTTGAAATACTTTCATATCTAGTTTTCAAATATGGATTTCACATTTCAAGTTGCCAATATAACAGGTAA

Fln Alignment:

Contig6441___AVILGSKDSTHWPVIDALPSYGRGRELPGGRHSGLITAFNVTDVVITGENGTIDGQGAVWWDSYHNHTLKYTRPHLIEVISSTDIVISNLTFLNSPFWNIHPVYCSNVHIHNLTILAPSHSPNTDGIDPDSSNDVCIEDCYMSIGDDLISIKSGWDQYGISFGRPSSNIIIRRVTGETPTSAGLAFGSEMSGGIIDVHVENLHVYNSRLGIRLKTAPGRGGFVKNVFISNMTMKNVQIAFDFTGSYGDHPDGGYDPNAFPDIDRLSFNDIVGDGIMIAGNIEGIQEAPFRDICLSNIYLNVTSES---PWNCSKVNGFSESVYPQPCAELQSPIPNDSSVCPS
B8LQW0______________AVILGSQDLEDWPLIPPLPSYGMGRDAPGPRYSSLINGYNLTDVVITGDNGTIDGQGAIWWQKFHKKILKNTRGYLVELMYSKDIIISNLTFLNSPAWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIQAINSETGIRIKTSPGRGGFVKDIFVNRMTMVNMKWAFTMTGSYGSHPDNKYDPNALPAVERISYSNIVATNVSVAGKLDGIANAPFKDICLTNVTITMAAKSKKYPWNCTYIHGLSNAVYPQPCSLLEERPAEGDAFCPS

SNPs (tot: 94)

Position	A %	C %	G %	T %	Probability
21	50			50	1.0
185	14		85		0.993533
186		14	85		0.993533
187	85	14			0.993533
190		85	14		0.993533
195		85		14	0.993533
196	85		14		0.993533
198	85	14			0.993533
228		75		25	1.0
287	12		87		0.992554
365	81		18		0.999994
447	83		16		0.994512
451		83	16		0.994512
453	83	16			0.994512
455		83		16	0.994512
456	83		16		0.994512
457	83		16		0.994512
458	83	16			0.994512
459	83			16	0.994512
462		20	80		0.995493
463	20		80		0.995493
466		20	80		0.995493
467	20		80		0.995493
714	66		33		1.0
715	66			33	1.0
716	66	33			1.0
717			33	66	1.0
721	66	33			1.0
724			33	66	1.0
726	66	33			1.0
728			33	66	1.0
730		33		66	1.0
733	66			33	1.0
734		33	66		1.0
735	33		66		1.0
771		85	14		0.993533
772	85			14	0.993533
773	85	14			0.993533
774	85		14		0.993533
781		85	14		0.993533
782		85	14		0.993533
784	85			14	0.993533
786	85			14	0.993533
789		14		85	0.993533
790	85			14	0.993533
791		14	85		0.993533
847		12		87	0.992554
849	87			12	0.992554
851	87		12		0.992554
852			62	37	1.0
853			75	25	1.0
855	83	16			0.994512
856		16		83	0.994512
858		83		16	0.994512
859	83		16		0.994512
862	83	16			0.994512
863	83			16	0.994512
866	16			83	0.994512
1065	88			11	0.923564
1068		11		88	0.923564
1069	88	11			0.923564
1072	88		11		0.923564
1077	11			88	0.923564
1078		11	88		0.923564
1080		11		88	0.923564
1081	11		88		0.923564
1092		10		90	0.90298
1093			10	90	0.90298
1095	90	10			0.90298
1096	90		10		0.90298
1099	10	90			0.90298
1101	90	10			0.90298
1102	90			10	0.90298
1105		90	10		0.90298
1107		90		10	0.90298
1108	90		10		0.90298
1173	66	33			1.0
1174			33	66	1.0
1176	66	33			1.0
1177			33	66	1.0
1181	66	33			1.0
1186			33	66	1.0
1187		33		66	1.0
1189	60		40		1.0
1190		66		33	1.0
1263	88	11			0.999952
1265	88			11	0.999952
1269	11			88	0.999952
1274		88	11		0.999937
1275		88	11		0.999937
1280			88	11	0.999937
1282		11	88		0.999937
1283			88	11	0.999937
1629	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain