SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6402

Length: 1131 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6402

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase C substrate 80K-H [Arabidopsis thaliana] dbj\|BAB11263.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED96753.1\| protein kinase C substrate 80K-H [Arabidopsis thaliana]	-	-	5.60519e-45	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	glucosidase ii beta	-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	67%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	67%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Low-density lipoprotein (LDL) receptor class A repeat	IPR002172	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKT5

Fln msg:

Fln protein: MMKGFGLYSVYDQAFFLLGLFSYAVSAFSTPLMLGIDPQEKGYYESKKIMCKDGSKSFSRDRLNDDFCDCADGTDEPGTSACPEGKFYCTNTGHAPILMSSSRVNDGICDCCDGSDEYYGKIRCPNTCRKAGKAVTEKLLENFLVNKERFSIDKQEREHERRKFLSEETALRSTKQEDKKLKETIQKLKDLKVLPLLELVVVASILVFSQCSSCCRRGQRQSRRRRL*

Protein Length: 229

Fln nts: CGTAGCGACCTTGGCTGTCACTCAGTTTTTAAATTTGGAAAGCCCAAATTCAATCTCAATTCTGAAGAATTTTAGTGCCAGGGTTTTGCCTGCTTTCAGAGAAGGAATTCTAAGTTTACAGTTTGG_-_ATGATGAAGGGCTTTGGCCTTTATTCAGTATATGACCAGGCATTTTTCCTCCTAGGACTGTTTTCATACGCTGTCTCGGCCTTTTCCACTCCCTTAATGCTTGGAATTGATCCTCAAGAAAAAGGATATTATGAATCAAAGAAAATAATGTGCAAAGATGGTTCAAAGAGTTTTTCTCGGGACCGTCTTAATGACGACTTCTGTGATTGTGCTGATGGAACGGACGAACCAGGAACATCAGCTTGTCCGGAAGGAAAATTCTATTGCACAAACACTGGGCATGCACCAATTCTAATGTCGTCATCTCGAGTCAATGATGGTATTTGTGATTGTTGTGACGGCAGTGATGAATATTATGGAAAAATAAGATGTCCTAATACTTGCAGGAAGGCTGGGAAGGCCGTCACAGAGAAGCTGTTGGAAAATTTCTTAGTTAACAAAGAAAGATTCTCCATAGATAAACAAGAAAGAGAGCATGAAAGACGGAAATTCTTGTCAGAAGAAACCGCATTAAGATCAACGAAGCAAGAAGACAAGAAACTCAAAGAGACAATCCAAAAACTCAAGGACTTGAAGGTGTTGCCGCTGCTCGAACTGGTTGTTGTTGCTTCGATACTAGTTTTTTCGCAGTGCTCTTCTTGTTGTAGGCGTGGCCAACGACAGTCTAGGCGTAGGAGGCTTTAA___CAAGCATGGTTGAAAATCCTTTGATACAAGATCTGCAGCAAAGAAGCTAGTTAGTTGATCCTGTCAACAACAAAAAAACAAGAAACCTTACTGTCAAGAAATAGTGGAAGTATTGATTATCCATTTTGTTTCTGGTTAAGGACCAGATTTTTCCTAGCAGGTAAAACACCCTCCTAAGTGATATTATAGTAAAGCCTTGAGTAATTATTGAATCGATGTATTGGGAAATTCCAGTTCATCATTTCAGCATGATATTACCTTGCAAGCTTCTTATTTTTGGGGCATGTTTCACTATCTAACACATGCATGTATGAATTCAAG

Fln Alignment:

Contig6402___MMKGFGLYSVYDQAFFLLGLFSYAVSAFSTPLMLGIDPQEKGYYESKKIMCKDGSKSFSRDRLNDDFCDCADGTDEPGTSACPEGKFYCTNTGHAPILMSSSRVNDGICDCCDGSDEYYGKIRCPNTCRKAGKAVTEKLLENFLVNKERFSIDKQEREHERRKFLSEETALRSTKQEDKKLKETIQXXXXXXXXXXXXXXXXASILVF
A9NKT5______________MMKGFGIYSVYCQALLLLGLFTFTISAFSTPALFGIDPQEKGYYESKKIMCKDGSKSFSRDRLNDDFCDCADGTDEPGTSACPEGKFYCTNTGHAPILMSSSRVNDGICDCCDGSDEYYGKIRCPNTCRKAGKAVTGKLLENFLVNKERFSIDKQEREHAKRKFLSEETTLTSLKQDDEKLNDTIRKLKDLKLLPLLELVIVASILVF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
438		71		28	1.0
634	12		87		0.992554
691	83			16	0.999991
692	83			16	0.999991
699		16	83		0.999991
701	75	16			0.99999
702			83	16	0.999991
703		16	83		0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain