SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6383

Length: 487 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene6383
ATGGGTTCATAATTTCATTTTCTGAGGTCTTAACCATGGGTGCCCAGAAGAATGCACCCAATGTGATTATCAAGCAGACAGACACAGCTGCACTGCTGTTTTCTTCTGGGACTACTGGGGCCAGCAAAGGGGTGGTCTTAACTCATAGGAATTTCATTGCATCTGCCTTGATGGTTACCAGTGACCAGGAAAGGAAGGGTGAGAGGCATACAGTCTTATGTGTCCTTCCCATGTTTCATGTCTTTGGGTTGTCTGTCATTATAAATGCTCAGCTTCAGAGAGGAAATACTGTGGTTTCAGTTGGGAAATTTAATTTCGTGAGGATGCTGAAGGCCATTGAAGAGTACAAAGTGACCTATTTACCTATAGTGCCACCCATTGCGATTGCCATTGCAAAAGAGAAGATGGTGGCACAATATGATGTGTCTTCCCTGAAGGAGGTTGTCAGTGGAGCAGCGTCCTTGGGAAAGGGTATCATGGAGGACTG

Ace file of the UniGene sp_v2.0_unigene6383

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9SCH9_RICCO	-	-	3.0e-39	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	amp dependent	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fatty-acyl-CoA synthase.	EC:2.3.1.86	-	0.0	77%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid biosynthesis	00061		77%
Blast2go	Metabolic pathways	01100		77%
Blast2go	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	77%
Blast2go	4-coumarate--CoA ligase.	EC:6.2.1.12	-	77%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	77%
Blast2go	Phenylalanine metabolism	00360	77%
Blast2go	Phenylpropanoid biosynthesis	00940	77%
Blast2go	Biosynthesis of phenylpropanoids	01061	77%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	77%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	77%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	77%
Blast2go	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity	GO:0047077	Molecular Function	77%
Blast2go	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	77%
Blast2go	peroxisome	GO:0005777	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNP4

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 161 - 540

Fln protein: GFIISFSEVLTMGAQKNAPNVIIKQTDTAALLFSSGTTGASKGVVLTHRNFIASALMVTSDQERKGERHTVLCVLPMFHVFGLSVIINAQLQRGNTVVSVGKFNFVRMLKAIEEYKVTYLPIVPPIAIAIAKEKMVAQYDVSSLKEVVSGAASLGKDIMED

Protein Length: 162

Fln nts: ATGGGTTCATAATTTCATTTTCTGAGGTCTTAACCATGGGTGCCCAGAAGAATGCACCCAATGTGATTATCAAGCAGACAGACACAGCTGCACTGCTGTTTTCTTCTGGGACTACTGGGGCCAGCAAAGGGGTGGTCTTAACTCATAGGAATTTCATTGCATCTGCCTTGATGGTTACCAGTGACCAGGAAAGGAAGGGTGAGAGGCATACAGTCTTATGTGTCCTTCCCATGTTTCATGTCTTTGGGTTGTCTGTCATTATAAATGCTCAGCTTCAGAGAGGAAATACTGTGGTTTCAGTTGGGAAATTTAATTTCGTGAGGATGCTGAAGGCCATTGAAGAGTACAAAGTGACCTATTTACCTATAGTGCCACCCATTGCGATTGCCATTGCAAAAGAGAAGATGGTGGCACAATATGATGTGTCTTCCCTGAAGGAGGTTGTCAGTGGAGCAGCGTCCTTGGGAAAGGaTATCATGGAGGACTG

Fln Alignment:

Contig6383___ISFSEVLTMGAQKNAPNVIIKQTDTAALLFSSGTTGASKGVVLTHRNFIASALMVTSDQERKGERH-TVLCVLPMFHVFGLSVIINAQLQRGNTVVSVGKFNFVRMLKAIEEYKVTYLXXXXXXXXXXXKEKMVAQYDVSSLKEVVSGAASLGKDIMED
B8LNP4______________ISFFEVLTMGAQKNPPEVIIEQTDTAALLYSSGTTGTNKGVVLTHRNFIASALMVISDQELEGERHLTHLCLVPMFHVYGLGCIVYGQLQRGNAVVSMGKFTFVRMLEAIQEYKITHLPLVPPIVIAVAKENIVARYDLSSLKKVMSGAAPLGKDIMEE

SNPs (tot: 3)

Position	A %	G %	T %	Probability
65		25	75	0.996473
70	75	25		0.996473
331	75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain