SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6380

Length: 1305 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6380 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana] dbj\|BAD95003.1\| hypothetical protein [Arabidopsis thaliana] gb\|ABF59245.1\| unknown protein [Arabidopsis thaliana] gb\|AEE83413.1\| Peroxisomal membrane 22 kDa (Mpv17/PMP22) fami	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	peroxisomal membrane protein pmp22	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mpv17/PMP22	IPR007248	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTQ7

Fln msg:

Fln protein: MGDIVKKTWHRYLLQLQLHPLRTKAMTAAALAGCSDSIGQKILGAKRLQLKQVSLMMLYGFAYAGPFGHFLHKFMDYIFKGKKDTKTIAKKVLLEQLTSSPWNNFFFMLYYGLIVDGRPWFLVKSKLKKDFPSVQLNAWKVWPIVAWVNYQYLPVQFRVLFQGFFAACWGIFLKMQARSVVIKKA*

Protein Length: 187

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGACTCATTTGAGGGCCGCGAAGGATACTCCGGCTGCGAATCCAACCCTGAACAGAGAAATAGCTGCTTTAAATATTCGTTTTGTGATTGAATAGACTAATAATATATTAGTTGCTGGTCCGTATCCCAAAAAACTCGGAAGAGTCCGAGTCTTTCGGGTCACAGCGTTGGGAAGGAAGAGTACGAGTTTTTTCGGCGTACAATATTTCATTGTTGAGAGAAGCTCTGTTCCCTTGAATCCCAAGCTCTGTTCCCTTGAATCCCATCGGACGGAGGCCTGTAGAAGCC_-_ATGGGAGATATTGTGAAAAAAACATGGCACAGATATCTGCTGCAATTGCAGCTCCATCCTTTAAGAACCAAGGCCATGACGGCGGCAGCATTGGCTGGCTGTAGCGATTCAATTGGCCAGAAAATCTTAGGCGCAAAAAGGCTTCAGTTGAAACAAGTGTCTCTCATGATGCTATATGGCTTTGCATATGCAGGACCCTTTGGGCACTTCCTGCATAAGTTTATGGATTACATATTCAAAGGCAAAAAGGATACAAAAACAATTGCTAAAAAGGTTCTGCTGGAGCAACTGACTTCTTCACCTTGGAACAATTTCTTTTTCATGCTTTACTATGGATTGATAGTTGATGGAAGACCATGGTTTCTTGTGAAGAGCAAGCTAAAGAAGGACTTTCCATCTGTGCAATTAAATGCGTGGAAGGTTTGGCCAATTGTAGCTTGGGTGAACTACCAGTATTTGCCTGTTCAATTTCGTGTTTTATTTCAGGGTTTCTTTGCAGCTTGCTGGGGCATTTTCCTAAAAATGCAAGCACGTTCTGTGGTCATTAAGAAGGCTTAG___AGAAAAAAAAAATTGTTGGGAAAAATTATTTTCTCATCACAATCAGATAAAGGATGGACAAATTTGCCATTTTGGAATATTTGTTTCCTTATTTGAAGGATTTCTTCATTCAGTAATTTCATGTTTTGAATCTTTCTTCAATTTATTTTAAATTGTTAAAAAAGGGGCAAGAACAATAATATTAATTGTTGAAGAATGTGTAGTATAAACTTCCTTTTGCTTTTGTTTTGAAGCTTAGAGCATTTTCATCTTTTGTACAGTTCTTATTTATGAAAAAACTTCATCACTGTAATATTTATATTTGTATTTGGCATGATACTTATAGTTATAGGTTTTCGCATGGACAAAAATGCACATTATAAAGAAATTTAAATCTTAAACAAAGAAAAGGTGATCTAATCAAAGCTTAGACAGATTACGAGTACTCTTCGC

Fln Alignment:

Contig6380___MGDIVKKTWHRYLLQLQLHPLRTKAMTAAALAGCSDSIGQKILGAKRLQLKQVSLMMLYGFAYAGPFGHFLHKFMDYIFXXXXXXXXXXXKVLLEQLTSSPWNNFFFMLYYGLIVDGRPWFLVKSKLKKDFPSVQLNAWKVWPIVAWVNYQYLPVQFRVLFQGFFAACWGIFLKMQ
A9NTQ7______________MGEIVKKTWHRYLLQLQLHPLRTKAFTAAALAGCSDSIGQKILGAKRLQLKQVSLMMLYGFAYAGPFGHFLHKFMDYIFKGKKDTKTTAKKVLLEQLTSSPWNNFFFMLYYGWIVDGRPWYLVKNKLRKDFPSVQLNAWKVWPIVAWVNYQYLPVQFRVLFQSFFAACWGIFLKMQ

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
136	66			33	0.997452
137	66			33	0.997452
138	66			33	0.997452
141	66		33		0.997452
148			80	20	0.995493
801		33		66	0.997452
972			25	75	0.996473
1089	66		11		0.999999
1090	88		11		0.923564
1091	88			11	0.923564
1092	88	11			0.923564
1095	11			88	0.923564
1103		12		87	0.992554
1168	85	14			0.993533
1169	85	14			0.993533
1184		16	83		0.994512
1185		16		83	0.994512
1187		16		83	0.994512
1196	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain