SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6372

Length: 1402 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6372 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S7Q2_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	zinc finger	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	0.0	70%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDSL	IPR001087	-	0.0	-
Sma3	Lipase, GDSL, active site	IPR008265	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPL3

Fln msg:

Fln protein: MEFYTASFLAVLLSVSITTAATAGPAQFIFGDSLFDTGNNNYLASIARADRHPYGIDFPNRRPTGRFSNGLNLADFICLKLGSDLVLPYLDPSLQGNELLKGANFASSGIGILNDTGVQFAEIIRMPHQFQLFQEYKDRVASIIGRNATNKLVADGFFSIALGGNDYVNNYYLLPVTARSLQFSLPAYTDFIISEYEKILAQFYDLGARRVLVLSSGPLGCIPMERALRSTNGECVPVLQKATKLFNDGLTLAIDRLNRRFPTPIYTMTAMFPIYMNLYTNPQAFGLGDAKNACCGQGPYNGIGLCTALSNLCPNRGNNVWWDQFHPTERAAKIIIDQSFSNLSSMSPISLKDPMKLHV*

Protein Length: 361

Fln nts: ATGGGGATCACTCGAACTCCTCTCTCACAAAGTGGTTCGATCCTTTTCGTCAACAGAGA_-_ATGGAATTCTATACTGCCTCGTTTCTTGCAGTGCTACTTTCTGTCTCTATAACAACAGCAGCTACCGCTGGCCCGGCGCAGTTCATTTTCGGAGACTCATTGTTCGATACTGGCAACAACAATTATCTCGCTTCGATTGCTAGAGCAGACCGTCATCCTTACGGGATTGATTTTCCCAACCGTCGACCGACTGGACGTTTTTCCAATGGATTAAATCTCGCCGATTTTATCTGCCTGAAACTTGGATCCGACCTGGTGCTGCCGTACTTAGATCCTTCACTCCAGGGCAATGAATTACTGAAAGGTGCCAACTTCGCGTCTTCAGGCATCGGCATTCTAAATGATACGGGCGTCCAATTTGCTGAAATTATAAGGATGCCTCACCAATTCCAACTTTTCCAAGAGTATAAAGACAGAGTTGCAAGTATCATAGGACGTAATGCGACCAATAAACTGGTTGCAGATGGGTTCTTTTCGATAGCACTTGGAGGAAATGATTACGTCAATAACTACTACCTTCTGCCTGTAACAGCGAGATCACTGCAGTTCTCTCTACCTGCGTATACTGATTTTATCATCTCCGAGTATGAGAAGATTCTGGCGCAATTTTACGATCTTGGAGCACGCAGGGTTCTGGTTCTGTCGTCGGGTCCTTTGGGGTGTATTCCTATGGAGAGGGCATTGAGGTCCACAAATGGTGAATGCGTGCCGGTGCTACAGAAAGCCACGAAGCTTTTTAATGATGGGCTAACACTCGCAATCGATCGACTCAACAGACGATTTCCTACCCCGATATATACAATGACTGCAATGTTTCCGATTTACATGAACTTGTACACGAATCCTCAAGCATTTGGGCTTGGGGATGCCAAAAATGCGTGCTGCGGACAAGGACCCTACAACGGTATTGGTCTCTGCACTGCCCTGTCAAATTTGTGCCCAAATAGGGGCAACAATGTGTGGTGGGACCAGTTTCATCCAACTGAGCGCGCTGCTAAAATCATAATTGACCAATCCTTTTCCAATCTATCCTCTATGAGTCCTATCAGCTTAAAAGATCCGATGAAACTCCATGTCTGA___TGGCCAAGTCGTATCTCTGTGATGTCTGAAGAAATCACATCTCGAAGATTGATTAATCGTGGGCTCTATTTTTATAAAAACAAATATGATGGCCCTGTCATCATATTTGTGTCTGTTCTCCTTCGTTATCAAACCCTCAAGCGATCTGCAGTAAAATTGTATTAGATTTCTACTTTCTGTAATGTGGAGCAGCCAGTAATGTTTTTCTGAGACTTACATGTTTACATCCCTGGGTCATTGGTATAAAATACTAAATTTTCACT

Fln Alignment:

Contig6372___MEFYTASFLAVLLSVSITTAATAGPAQFIFGDSLFDTGNNNYLASIARADRHPYGIDFPNRRPTGRFSNGLNLADFICLKLGSDLVLPYLDPSLQGNELLKGANFASSGIGILNDTGVQFAEIIRMPHQFQLFQEYKDRVASIIGRNATNKLVADGFFSIALGGNDYVNNYYLLPVTARSLQFSLPAYTDFIISEYEKILAQFYDLGARRVLVLSSGPLGCIPMERALRSTNGECVPVLQKATKLFNDGLTLAIDRLNRRFPTPIYTMTAMFPIYMNLYTNPQAFGLGDAKNACCGQGPYNGIGLCTALSNLCPNRGNNVWWDQFHPTERAAKIIIDQSFSNLSS-MSPISLKDPMKLHV
B8LPL3______________MDFYTVSLVAVLVSVCVTTADAAPPAQLVFGDSLVDTGNNNYLVAIARADRSPYGIDFPSRLPTGRFCNGLNIADFIGLKFGSQPVLPYLDPSLQGQELLRGANFASAGIGILNDTGLQFGQIIRMDEQFEFFQKYQDRVASIIGRNATNKLVAEGLVSIALGGNDYVNNYFLLPVTLRSLQFSLPAYTNFIISEFEKILARFYELGARRVLVLSSGPLGCIPMERATSSLNGDCAQRPQQAAKLFNKGLNIIVNRLNRRFSAQIYTITKMFPAMMDLYTNPQLYGIGDAKDACCGQGPYNGLGLCTSLSLLCPDRGNNVWWDQFHPTERAARIIVDKFFSGSPSYVGPVSIQDLMKLDV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
158	87		12		0.992554
173	10	90			0.90298
176		90	10		0.90298
177	44			55	1.0
489	20		80		0.995493
595	85		14		0.993533
668		14		85	0.993533
891		27		72	1.0
996		14		85	0.993533
1155	12	87			0.992554
1287		17		82	1.0
1295		11		88	0.999952
1302	88		11		0.999952
1314			11	88	0.999952
1360	21		78		1.0
1374			21	78	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain