SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6369

Length: 1421 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6369

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	D-aminoacyl-tRNA deacylase [Arabidopsis thaliana] sp\|Q9ZPQ3.2\|GEK1_ARATH RecName: Full=D-aminoacyl-tRNA deacylase; AltName: Full=Ethanol tolerance protein GEKO1 dbj\|BAC65101.1\| GEKO1 [Arabidopsis thaliana] gb\|AAY27066.1\| At2g03800 [Arabidopsis thaliana] d	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	d-aminoacyl-trna deacylase	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	response to toxin	GO:0009636	Biological Process	76%
Blast2go	D-aminoacyl-tRNA deacylase activity	GO:0051499	Molecular Function	76%
Blast2go	plastid	GO:0009536	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	D-aminoacyl-tRNA deacylase	IPR007508	-	-
Sma3	D-Tyr-tRNATyr deacylase	IPR018033	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADU7

Fln msg:

Fln protein: MRFLSWLKSGRQKVRRVEKMVSLVVATTSDPASIGPASALLAMSSDWCPGPKLQDISTFLNGRVRLLKQDRGIVEEDNLDKRWEELTGEIVDEIIFLSKHVAVSTRPAVTVHPIGVPHLQSQEECTAGGKPGWAGPPCPRIGPWLRFMKTIVEAHNLTPEFEVTLEATHHGPVVSKPAMFVEIGSTEEYWKRQDAAQVIALVVWQGLGLDGGKGVGNWTEDQKGKKVLVGIGGGHYVPRHMDIVWKEDVWVGHLLSGYSLPMEEPSLKKKEYHFNDIGGSWKDAIKVAVATTQEAFPGAEVLVHLDSKSFKGWQRSVLSQFLSQENIPIGKPNDFL*

Protein Length: 338

Fln nts: TAAAAGTTGCTATATTTCAACCTATAAATAGCGAAAGCATCATAAAAATAAATATGATGCAGAAATTGGAAGAACTGGATGCACGAATGTTCAAACCACAACCCGTATGGAACACGGATGTACATACGGCACAACCCGAATAGACCTGACACGTTAGAAGCGGACTATATATAATAGTATT_-_ATGCGATTTTTGTCTTGGCTGAAGTCAGGCAGGCAAAAAGTTAGGCGGGTGGAGAAAATGGTGAGCCTGGTAGTGGCAACAACATCTGATCCAGCTTCCATCGGGCCTGCTTCGGCTCTGCTTGCAATGTCCTCTGACTGGTGCCCTGGACCTAAATTGCAGGATATTTCAACATTTCTCAATGGAAGGGTCCGATTACTGAAGCAAGATCGAGGCATTGTGGAGGAAGACAACTTGGATAAACGTTGGGAGGAGTTGACGGGGGAGATTGTGGATGAAATAATATTTCTGAGCAAGCACGTAGCAGTTTCAACCCGCCCTGCTGTTACAGTTCATCCGATAGGTGTGCCACATTTGCAATCACAGGAAGAGTGCACTGCTGGAGGGAAGCCTGGTTGGGCAGGTCCACCTTGTCCTCGGATAGGGCCATGGCTTAGGTTTATGAAGACAATTGTTGAAGCACACAATCTTACACCAGAGTTTGAGGTCACCCTTGAGGCTACTCACCATGGGCCTGTAGTTAGTAAGCCGGCAATGTTCGTTGAGATTGGTAGCACCGAGGAGTATTGGAAGAGGCAGGATGCTGCACAAGTTATTGCTCTGGTAGTATGGCAAGGCCTGGGACTAGATGGAGGCAAGGGCGTGGGGAATTGGACTGAGGACCAAAAGGGAAAGAAGGTTCTGGTCGGGATTGGGGGTGGACATTATGTTCCTCGGCATATGGATATTGTGTGGAAAGAAGACGTTTGGGTAGGCCACCTGCTATCGGGATATTCTTTACCTATGGAAGAACCTAGTTTAAAGAAAAAGGAATATCATTTCAATGATATTGGTGGATCATGGAAAGATGCAATCAAGGTGGCAGTTGCAACAACACAAGAAGCATTTCCAGGAGCAGAGGTTCTTGTACATCTTGATAGTAAGAGCTTCAAGGGTTGGCAACGAAGCGTGCTCTCTCAGTTTTTGTCACAGGAGAACATACCAATTGGCAAACCTAATGACTTTTTGTAA___TCCTTTAGAAGCACTTTGTAATCATGTTCATTTAACTCCAAAGGCATTCACCTTATATTCAGATAAATGTATGATTGGATACAATTTGAACTTTCTAAAATGATACTTGGACTATAATGAAGGAAGGTGATTTATTTGCATTAGCAAAGTGCTATCAGTGCTTTCTTGTTTCAATTCATATCTATCACATTATATCTATTTGAGAAATTATGCAATGAACTTTTTTATT

Fln Alignment:

Contig6369___MVSLVVATTSDPASIGPASALLAMSSDWCPGPKLQDISTFLNGRVRLLKQDRGIVEEDNLDKRWEELTGEIVDEIIFLSKHVAVSTRPAVTVHPIGVPHLQSQEECTAGGKPGWAGPPCPRIGPWLRFMKTIVEAHNLTPEFEVTLEATHHGPVVSKPAMFVEIGSTEEYWKRQDAAQVIALVVWQXXXXXXXXXXXNWTEDQXXXXXXXXXXXXHYVPRHMDIVWKEDVWVGHLLSGYSLPMEEPSLKKKEYHFNDIGGSWKDAIKVAVATTQEAFPGAEVLVHLDSKSFKGWQRSVLSQFLSQENIPIGKPNDFL
D5ADU7______________MVSLVVATTSDPASIGPASALLAMSSDWCPGPKLQDISTFLNGRVRLLKQDRSIVEEDNLDKRWEELTGEIVDEIIFLSKHVAVSNRPALTVHPIGVPHLQSQEECWAGGKPGWAGLPCPRIGPWLRFMKTIAEAHNLTPEFEVTLEATHHGPVVSKPTMFVEIGSTEEYWKRQDAAQVVALVVWQGLGLDGGNGVGNWTKAQTGKKVLVGIGGGHYVPRHMDIVWKEDVWVGHLLSGYSLPMEEPSLKKKEYHLNDIGGAWKEAIRVAVATTREAFPGAEVLVHLDIKSFKGWQRSVLSQFLSQENIPIGKPNEFL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
740		88		11	0.923564
777	71		28		1.0
861			75	25	0.996473
862			25	75	0.996473
1331		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain