SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6352

Length: 1217 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6352 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter I family member 17 [Arabidopsis thaliana] sp\|Q9C9W0.1\|AB17I_ARATH RecName: Full=ABC transporter I family member 17; Short=ABC transporter ABCI.17; Short=AtABCI17; AltName: Full=MRP-related protein 1; AltName: Full=Non-intrinsic ABC protein	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	abc transporter i family member 17	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphate-transporting ATPase.	EC:3.6.3.27	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	79%
Blast2go	phosphate ion transport	GO:0006817	Biological Process	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	phosphate ion transmembrane-transporting ATPase activity	GO:0015415	Molecular Function	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphate transport system permease protein 1	IPR005670	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADF3

Fln msg:

Fln protein: MEFEGADRLREALLLRIDEENVEGSANGDLHPKMSIRNLQRNSEEGRSLLSGVSVDIWKGTVVGVIGPSGSGKSTFLRALNRLWEPPADSVFLDYHDITKLDVLALRRRVGMLFQTPALFDGTVGDNIRYGPALRGKKLSEEEVTKYLGFADLDPSLASRSASGLSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQHIEESIGKLKRGKGMTIIMVSHSVKQIQRVADVVFLLVDGQIVETLKPDQLSNANHPMARMFLELSS*

Protein Length: 270

Fln nts: ATTTATTAAATTAAAAGTGGGCTCTGCCTTCGGAGAGACGACTGGTAGATTTCCAGGCACATCCAGGGGTGAGGCACAACTGGGGGAAAGCTAACTGGTGAAATCCATACCAAACATAAATTCATACTCTCAGCGGGAGGCGGAGCCACAGCCTGGGCTTTCAAGGAGTGGATATCGTTGTTTCATGAATTTTATCGGACTTGGAAAGATTCAGTTGGGGTCGAGATTGCAGGTCGGTCG_-_ATGGAATTCGAAGGAGCCGATAGATTGCGAGAGGCGCTGCTGTTGCGCATCGACGAGGAGAATGTGGAGGGTTCGGCTAATGGCGATCTGCATCCGAAAATGAGTATCAGAAATCTGCAGAGGAACTCGGAGGAGGGGCGGAGCCTTCTGTCGGGAGTGTCGGTGGATATATGGAAGGGGACGGTGGTGGGTGTAATTGGTCCCAGCGGTAGCGGCAAATCCACATTCCTGAGGGCTTTGAACAGGCTCTGGGAACCGCCTGCCGACTCTGTGTTCCTGGACTACCACGACATTACCAAGCTCGATGTGCTCGCTCTCCGGCGGCGCGTTGGCATGCTCTTCCAGACGCCGGCGCTCTTCGATGGAACCGTGGGGGATAACATAAGGTACGGGCCGGCTCTGCGCGGTAAAAAATTGTCAGAGGAGGAGGTGACCAAATATCTAGGTTTTGCAGACTTGGATCCCTCCCTCGCTTCCAGATCCGCTAGCGGTCTCTCCGTCGGGCAGGCGCAGCGGGTGGCGTTGGCCAGGACTCTCGCCAATGAGCCCGAGGTGCTGTTGCTGGACGAGCCGACGAGCGCTCTGGATCCCATCTCGACTCAGCACATCGAGGAGTCGATCGGGAAGCTGAAAAGGGGGAAGGGAATGACCATAATCATGGTGTCCCATAGTGTGAAACAGATTCAGAGGGTCGCGGACGTCGTGTTTCTGTTGGTGGACGGGCAGATTGTGGAGACTCTGAAACCCGATCAGCTCTCCAATGCCAACCATCCCATGGCTCGCATGTTCCTTGAATTGAGTTCCTGA___ATAATGAGATAATATATAAAAGGAACTTTCTGTTTTAACAGTGTGTTCTTCCCAGTTTTGTATTTAAATAGGGTAATGAGATGATATTTAAATTAGTATGAGATACTGTAATGAGTTGTATTCTTGGTTTTTCTTTATTCACAAATGTTCAGATACTGTAATGAGTTGTA

Fln Alignment:

Contig6352___MEFEGADRLREALLLRIDEENVEGSANGDLHPKMSIRNLQRNSEEGRSLLSGVSVDIWKGTVVGVIGPSGSGKSTFLRALNRLWEPPADSVFLDYHDITKLDVLALRRRVGMLFQTPALFDGTVGDNIRYGPALRGKKLSEEEVTKYLGFADLDPSLASRSASGLSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQHIEESIGKLKRGKGMTIIMVSHSVKQIQRVADVVFLLVDGQIVETLKPDQLSNANHPMARMFLELSS
D5ADF3______________MEFEGVESLREELLLRIDEEDAEASRNGDLHPKMSVRDLRRKSEEGRSLLSGVSVDIWKGTVVGVIGPSGSGKSTFLRALNRLWEPSADSVFLDYHDITKLDVLALRRRVGMLFQTPALFDGNVADNIKYGPALRGLKLSDEEVSKYLGWADLESSLASRSVGGLSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQHIEESIGKLKRGKGMTIIMVSHSVKQIQRIADVVFLLVDGQIVETLKPDQLSNANHPMARMFLELSS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
51			12	87	0.992554
121	77		22		0.999999
155		11		88	0.923564
332			11	88	0.923564
333		11		88	0.923564
335	14	85			0.993533
336		85	14		0.993533
337			14	85	0.993533
341		85	14		0.993533
342	14	85			0.993533
344			14	85	0.993533
810	94		5		0.997984
1022			55	44	1.0
1033	42			57	1.0
1035	57	42			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain