SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6341

Length: 1394 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6341 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3'-5' exonuclease, putative [Arabidopsis thaliana]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	probable exonuclease mut-7 homolog	-	-	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	3'-5' exonuclease domain	IPR002562	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1U4

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 298 - 204

Fln protein: MIQYLQLQDFVPEENVIWVETIAGLADASCHFSHTNIVGIDCEWRPNYIKEEKTSKVSILQVATRERVYIIDLIKFYKHNRDELDNFIKSIFYSRNILKLGYALHNDLKQLLHSYGDMTCFHYCEPFLDLQRLHNHSKGGLSGLAKITLGSYLSKTTRMTDWEQRPLNLSQLHYAALDAVVLISIFDFVSREALALGEGNRDLSDWISHVTLFGSRLGHKKYPIVDDLKAQSIVSLATNEVDTKLISSRFLVAENENPVPDHESKVMGIAVSDKDTEISGSLDMARALKEDLVSFRL*

Protein Length: 299

Fln nts: CGTCGTGACCTTGGCTGTCACACAAAGCTGGTAGAGAAAGGATGCTGGGATATTGCAGAATCAATTGCTATTGAAGATTGCAAACTTGTTGAATACCTGGTTGATCTGGCACGAGATATTGGTGATGCAGAAAAGGCAGCCGATCTTTGTTACCGCCATGAGATAGCATACATCCCATTCTGTTCAGTTGATGGAGGCCGCCCT_-_ATGATTCAGTATTTGCAATTACAAGACTTTGTTCCAGAAGAAAATGTCATTTGGGTTGAAACCATTGCTGGTTTGGCTGATGCTTCATGCCATTTTTCTCATACTAATATAGTTGGAATAGATTGTGAATGGAGACCCAATTACATAAAAGAGGAGAAGACAAGCAAGGTATCTATTTTGCAAGTTGCTACTAGAGAAAGAGTTTATATCATTGATCTAATAAAATTTTACAAGCACAACCGGGATGAATTGGATAACTTCATCAAAAGTATTTTTTATTCTCGTAACATTCTGAAGTTAGGTTATGCTTTGCATAATGATCTGAAGCAGCTGTTGCATTCATATGGGGACATGACATGCTTCCATTACTGTGAACCATTTTTGGACCTGCAAAGACTTCACAACCACTCGAAGGGAGGCCTCTCTGGCCTTGCAAAGATTACACTGGGGAGTTATTTGAGTAAGACAACACGCATGACCGACTGGGAGCAGCGTCCCTTAAATTTAAGCCAGCTGCATTATGCAGCCCTCGATGCAGTTGTCTTGATCTCTATATTCGATTTTGTTTCACGTGAAGCTTTGGCACTTGGAGAAGGGAATCGAGACTTATCTGATTGGATATCGCATGTCACACTCTTCGGCAGTAGATTAGGTCACAAGAAGTACCCGATAGTTGATGATCTGAAAGCTCAATCAATTGTTTCATTAGCAACAAATGAAGTGGATACTAAACTGATATCCTCGAGGTTTCTGGTTGCTGAAAATGAAAATCCAGTCCCAGACCATGAATCTAAAGTAATGGGTATTGCTGTCTCAGATAAAGATACAGAAATAAGTGGCAGTTTAGATATGGCACGTGCATTAAAAGAGGATCTAGTAAGTTTTAGGTTGTAAGCAGCTCTGACAAGTAGAATTGAAAAACATTGTGTTGTGTTGTCTAGACTTGATAGTTTTGATCTGTATTTATATAATTCGTTATATTTTGAGAATACTTTTAGTCTCTGGTATTTCAATCATATATATTGAAGCAATAGGATATGAGCTTTATGTACGCATACAACTGCAATTTTTTGGTGAGTTTGGTTTGATGGCCCTGCAGCAATCATCTTCTGTGCCTCTTTAGTTTGTCCGGACATTGAGAAGATCTAGGAAATTAAAGAAGATATAAAGTGATGCGTAGTTTTAAGTTT

Fln Alignment:

Contig6341___IVGIDCEWRPNYIKEEKTSKVSILQVATRERVYIIDLIKFYKHNRDELDNFIKSIFYSRNILKLGYALHNDLKQLLHSYGDMTCFHYCE-PFLDLQRLHNHS--KGGLSGLAKITLGSYLSK--TTRMTDWEQRPLNLSQLHYAALDAVVLISI
A9P1U4______________IVGFDMEWRPSFQRGWEND-TALLQLCTDNGCLIIQML-FLDFIPEALVSFLKD----PGVKLVGVGIERDAAKLMNDHG-LECGGQVELGALAAEKLERRELKQAGLKGLAKEVLGLRLSKPKSISMSNWAWAILQHRQIQYACIDAFVSLAI

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1281	83			16	0.994512
1351		60	20		0.99255
1352	40	60			1.0
1355			80	20	0.995493
1356		80		20	0.995493
1358		25		75	0.996473
1359	25	75			0.996473
1360	25	75			0.996473
1361			25	75	0.996473
1362			25	75	0.996473
1365	25			75	0.996473
1367			25	75	0.996473
1370		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain