SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6332

Length: 1325 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6332

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Lon protease homolog, mitochondrial; Flags: Precursor dbj\|BAD30304.1\| putative ATP-dependent proteinase LON2 [Oryza sativa Japonica Group] dbj\|BAD30597.1\| putative ATP-dependent proteinase LON2 [Oryza sativa Japonica Group]	-	-	75%
FL-Next	Isoform 2 of Lon protease homolog, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0689300	-	-	75%
Blast2go	atp binding	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	86%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	86%
Blast2go	DNA binding	GO:0003677	Molecular Function	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	86%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	cytosol	GO:0005829	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3		IPR001984	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Peptidase S16, ATP-dependent protease La	IPR004815	-	-
Sma3	Peptidase S16, active site	IPR008268	-	-
Sma3	Peptidase S16, Lon C-terminal	IPR008269	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q69UZ3-2

Fln msg: Distance to subject end: 703 aas, your sequence is shorter than subject: 290 - 976

Fln protein: MLKVLSHSFSSQSFARRLAGGVSKPCPPHGNGASLFRFWDSLRKQNEANLAYRPRYFCSESGSGDGSESGNSDGSGGSSGENSGNVKGEAAEGTVEGVPVKSSSSAIVSTNPRPEDYRTVIALPLPHRPLFPGFYMPIYVKDPKLLALLAENRKRSASYAGAFLVKDEPGSDSTLISGSEAEKSIYELKGEALYKRLHEVGTLAQITTIQGDQVVLIGHRRLRITEMVSEDPLTVKVDHLKEKPYDKDDDVIKATSFEVISTLRDVLKTSSLWRITCRHTLSMLVTSTFP

Protein Length: 291

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTCTATATACTTTACTTTTAGTCGAGAGCGAGGGCTTTAGGAGGGTTTAGTAGGCAGTTAGTCGTTGGCTTTGGTGAGCTCCGATCGATCTGCAAAACACATCTAAATATTCCATCGAGCTCAGACAAATTCACTGAAAGCTCACACAAATTTATTGAAAGGCTGAGGGGGCCTTTTATTGCGAATCTTACCGCTAAATTTAGAGGCTTGGTTCTCCCAGTTCGGCCTGAACCAGCTTTCCAAGGCAAAAGGCAGACGTTCAAGCCAAAAGTTTACATTTTGTGCCTGGAAAATTTGGTTTCGGGCCAAATTTTGAATTAAGCAGGGTAGCAATAAAAAAAATAGCCAAATTTTTAACTAACGGGGCCAGAAAACAAAGAACATTCTCTAACAGTAGGTTTTCTGGGAGATAATTTTGAGGTCATCTA_-_ATGCTTAAGGTGCTATCGCATTCTTTCTCTTCACAGAGTTTCGCGAGAAGACTCGCGGGCGGAGTTTCGAAACCATGTCCTCCCCATGGCAACGGTGCGTCGTTATTCAGGTTTTGGGATTCGTTACGCAAGCAGAACGAGGCTAATCTGGCATATCGTCCTCGCTATTTTTGCTCGGAATCAGGCAGTGGCGATGGTTCGGAGTCCGGGAACAGTGATGGGTCGGGGGGTTCTTCCGGCGAAAATAGCGGGAACGTTAAAGGGGAGGCGGCAGAGGGGACAGTGGAGGGGGTGCCCGTGAAGAGTTCGTCGTCGGCTATTGTTTCGACCAATCCCCGACCGGAGGATTATCGCACGGTCATAGCTTTGCCATTGCCACATAGGCCTTTGTTTCCAGGTTTCTATATGCCAATTTATGTCAAGGATCCAAAACTCTTAGCACTATTAGCGGAGAATCGCAAAAGATCAGCATCATATGCAGGTGCTTTTCTGGTCAAAGACGAGCCTGGTTCTGATTCTACTTTAATCTCGGGTTCTGAAGCAGAGAAAAGTATTTATGAATTGAAGGGTGAAGCACTTTACAAGCGACTTCATGAAGTTGGTACATTAGCTCAGATTACCACTATACAGGGGGATCAGGTGGTTCTGATAGGTCATCGGCGTTTGCGGATTACTGAGATGGTTAGTGAGGACCCTCTAACAGTTAAAGTGGACCACCTTAAGGAAAAGCCATATGATAAAGATGATGATGTGATAAAGGCAACATCTTTTGAAGTTATTTCAACTCTAAGGGATGTGCTAAAGACGAGTTCATTATGGAGGATCACGTGCAGACATACACTCAGCATGTTGGTGACTTCAACTTTCCCCGA

Fln Alignment:

Contig6332___AAEGTVEGVPVKSSSSAIVSTNPRPEDYRTVIALPLPHRPLFPGFYMPIYVKDPKLLALLAENRKRSASYAGAFLVKDEPGSDSTLISGSEAEKSIYELKGEALYKRLHEVGTLAQITTIQGDQVVLIGHRRLRITEMVSEDPLTVKVDHLKEKPYDKDDDVIKATSFEVISTLRDVLKTSSLWR
Q69UZ3-2____________AAEGEADG----KASSAIVPTVLRPEDCLSVIALPLPHRPLFPGFYMPIYVKDQKLLQALVENRKRSIPYAGAFLVKDEEGTDPNIVTSSDSDKSIDDLKGKELLQRLNEVGTLAQITSIQGDQVVLLGHRRLKITEMVQEDPLTVKVDHLKEKPYDKDDDVIKATSFEVISTLREVLKASSLWK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
150	16	83			0.994512
153	83			16	0.994512
733	25		75		0.996473
927	25	75			0.996473
931		75		25	0.996473
949	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain