SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6326

Length: 663 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6326 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin H-type n=5 Tax=Picea RepID=TRXH_PICMA	-	-	1.99993e-41	84%
FL-Next	sp=Thioredoxin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	thioredoxin h	-	-	7.63287e-42	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on a sulfur group of donors, With a disulfide as acceptor.	EC:1.8.4.-	-	7.63287e-42	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	7.63287e-42	81%
Blast2go	glycerol ether metabolic process	GO:0006662	Biological Process	7.63287e-42	81%
Blast2go	transport	GO:0006810	Biological Process	7.63287e-42	81%
Blast2go	positive regulation of catalytic activity	GO:0043085	Biological Process	7.63287e-42	81%
Blast2go	electron transport chain	GO:0022900	Biological Process	7.63287e-42	81%
Blast2go	enzyme activator activity	GO:0008047	Molecular Function	7.63287e-42	81%
Blast2go	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	GO:0016671	Molecular Function	7.63287e-42	81%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	7.63287e-42	81%
Blast2go	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	7.63287e-42	81%
Blast2go	cytosol	GO:0005829	Cellular Component	7.63287e-42	81%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Thioredoxin	IPR005746	-	-
Sma3		IPR006662	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR012335	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
83	80			20	0.995493
84	80		20		0.995493
85	80			20	0.995493
105	16			83	0.994512
107		83	16		0.994512
306	12	87			0.992554
308		87		12	0.992554
309	87		12		0.992554
404		87	12		0.992554
405			87	12	0.992554
451	83			16	0.999991
631		11	88		0.923564
637	11	88			0.923564
639		88		11	0.923564
640		33	33	11	1.0
641	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain