SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6274

Length: 1410 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6274

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lariat debranching enzyme [Arabidopsis thaliana] sp\|Q94K01.1\|DBR1_ARATH RecName: Full=Lariat debranching enzyme; Short=AtDBR1 gb\|AAK43876.1\|AF370499_1 RNA lariat debranching enzyme - like protein [Arabidopsis thaliana] gb\|ABI54338.1\| At4g31770 [Arabidopsi	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	lariat debranching enzyme	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	77%
Blast2go	Methane metabolism	00680	77%
Blast2go	Phenylpropanoid biosynthesis	00940	77%
Blast2go	Biosynthesis of phenylpropanoids	01061	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	77%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	77%
Blast2go	mRNA processing	GO:0006397	Biological Process	77%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	77%
Blast2go	heme binding	GO:0020037	Molecular Function	77%
Blast2go	RNA lariat debranching enzyme activity	GO:0008419	Molecular Function	77%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Lariat debranching enzyme, C-terminal	IPR007708	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEH6

Fln msg: Distance to subject end: 35 aas, your sequence is shorter than subject: 399 - 434

Fln protein: MKIAIEGCAHGDLDNIYATLQHLEELENIKIDLLICCGDFQAVRNENDLESMACPVKYRTMNTFWKYYSGEEIAPVPTIFVGGNHEASNYLWELYYGGWVAPRIFFMGFAGVIWFGNIRIGGLSGIFKSRNYYSGHYERAPYNESDIRSIYHVREYDVQKLMQIEEPLDIFISHDWPRGITDFGNSEQLLRHKPFFENEIKDKTLGSQPAEELLKKLKPSYWFSAHLHTKFAAVVQHGENGPITKFLALDKCLPGHNFLQVIEIESDAGPHEIHYDEEWLAITQAYNPYFPLSRKSVQLIAERPDLGFHRQCVRKRMEEINMKPFDFTMTVPPYDPTQGKTANPASLGHVRNPQTEAFLQLLDLHYLLDSAPEHATPNRSPVSLMIQVKDENEIVLDDA

Protein Length: 400

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCGATTGGACTACACTAAACTGGTCATTGTCCTCCTCGACTGCCATCCTCGCAGCGGCAACCTGTCGAGCAACGATCTTTTCTTTTTTTCAACCAGTGTTCTCTTCAGTGGAACCGGAAGTATCCTTCAATTTGGACAGCTAGTTGCAACATTTTAAAATTTGCTCATTTATTCATTGCAGTTCGGCC_-_ATGAAGATTGCAATTGAAGGATGTGCCCATGGGGATCTTGACAACATTTATGCAACATTGCAGCACTTGGAAGAGTTGGAAAATATAAAGATCGATCTTCTAATCTGTTGTGGTGACTTCCAGGCTGTTAGAAATGAAAATGATCTGGAATCTATGGCTTGCCCTGTCAAATATCGTACTATGAACACCTTCTGGAAATATTATTCAGGGGAGGAAATAGCACCAGTTCCAACGATATTTGTTGGAGGAAATCACGAGGCATCAAATTATCTGTGGGAACTTTACTATGGAGGATGGGTTGCACCAAGGATATTCTTTATGGGGTTTGCTGGGGTCATCTGGTTTGGAAATATTCGCATTGGTGGCCTTTCTGGCATTTTCAAATCACGCAATTATTATTCAGGGCATTATGAAAGGGCACCTTACAATGAGAGTGATATCAGGTCTATATATCATGTGCGTGAATATGATGTTCAGAAGCTTATGCAAATTGAGGAGCCTCTAGATATATTTATTTCACATGATTGGCCTCGTGGTATAACCGACTTTGGAAATTCAGAGCAGTTACTTCGTCACAAGCCATTTTTTGAAAATGAGATAAAGGACAAGACTTTGGGGAGTCAGCCTGCTGAAGAACTTTTGAAAAAGCTGAAGCCTTCATATTGGTTCTCTGCACATTTGCACACTAAATTTGCAGCTGTTGTTCAACATGGGGAGAATGGACCTATCACAAAATTTCTTGCATTGGATAAGTGTCTTCCTGGCCACAATTTTCTCCAGGTTATTGAAATAGAATCTGATGCAGGGCCACATGAGATCCATTATGATGAAGAATGGCTTGCAATAACACAAGCATACAATCCTTATTTTCCTTTAAGCCGAAAATCTGTACAGTTGATAGCAGAACGGCCAGACCTGGGATTCCATCGCCAGTGTGTGAGAAAGCGTATGGAAGAAATCAACATGAAGCCTTTTGATTTTACAATGACAGTCCCACCTTATGATCCCACCCAAGGAAAGACAGCCAATCCAGCATCTCTTGGTCATGTTCGTAACCCACAAACAGAGGCATTTTTACAGCTACTAGATTTGCATTACCTTCTGGATTCTGCACCTGAGCATGCTACACCAAATAGAAGCCCGGTGTCTTTAATGATACAAGTCAAGGATGAAAATGAAATTGTACTAGATGATGCC

Fln Alignment:

Contig6274___MKIAIEGCAHGDLDNIYATLQHLEELENIKIDLLICCGDFQAVRNENDLESMACPVKYRTMNTFWKYYSGEEIAPVPTIFVGGNHEASNYLWELYYGGWVAPRIFFMGFAGVIWFGNIRIGGLSGIFKSRNYYSGHYERAPYNESDIRSIYHVREYDVQKLMQIEEPLDIFISHDWPRGITDFGNSEQLLRHKPFFENEIKDKTLGSQPAEELLKKLKPSYWFSAHLHTKFAAVVQHGENGPITKFLALDKCLPGHNFLQVIEIESDAGPHEIHYDEEWLAITQAYNPYFPLSRKSVQLIAERPDLGFHRQCVRKRMEEINMKPFDFTMTVPPYDPTQGKTANPASLGHVRNPQTEAFXXXXXXXXXXDSAPEHATPNRSPVSLMIQVKDENEIVLDDA
D5AEH6______________MKIAIEGCAHGDLDNIYATLQHLEESENIKIDLLICCGDFQAVRNENDLESMACPVKYRTMNTFWKYYSGEEIAPVPTIFVGGNHEASNYLWELYYGGWVAPRIFFMGFAGVIWFGNIRIGGLSGIFKSHNYYSGHYERAPYNNSDIRSIYHVREYDVHKLMQIEEPLDVFISHDWPRGITDFGNSEQLLRHKPFFENEIKSKTLGSQPAEELLKKLKPSYWFSAHLHTKFAAVVQHGENGPITKFLALDKCLPGHNFLQVIEIESDAGPHEIRYDEEWLAITQAYNPYFPLSRKSVQLMAELPDLGYHRQHVRNCMKEINMKPFDFTMTVPPHDPTQGKTASPASLGHVRNPQTEAFLQLLDLYYLLDYAPEHATPNRSPVSSMIRVKDENEIVLDDA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1057			90	10	0.90298
1105	87		12		0.992554
1172	25		75		0.996473
1226		33		66	0.997452
1271		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain