SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6249

Length: 1746 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6249 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative partner of Nob1 [Oryza sativa Japonica Group] dbj\|BAB90119.1\| putative partner of Nob1 [Oryza sativa Japonica Group] gb\|EEE55513.1\| hypothetical protein OsJ_03725 [Oryza sativa Japonica Group]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	partner of nob1	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	0.0	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	K Homology domain	IPR004087	-	0.0	-
Sma3		IPR018111	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS94

Fln msg:

Fln protein: MDKMDTALVEQPQPMAIEQSNLQANMEHGTSKIAPMKPKFEPLTAYEMSGGRPEFRKVSVPAHRYAPLKKMWMEIYTPVYEQMKIDIRMNLKNRKVELKSRFDTPEIGNLQKCADFVHAFMLGFDVPDAIALLRLDDLYVETFEIKDVKTLQGEHLSRAIGRLSGKGGKTKFAIENSTRTRIVIAESKIHILGSFLNIKVARDALCSLILGSPAGKVYSKLRAVTARMAEKF*

Protein Length: 234

Fln nts: ATGGGGACACTCAAAGTTGTTACCCAGCAATGCCACTACTTAATATAAACACATCATTAACGTGAAAGCGATGCTTGGCTGACCCATTGATAATCAATTGTCTTCGGACGTAAAATATAAAACATATTTTTCTGAGGGATAGGGTTTTGTAGCCATTAGGGTTTTGTACGCTCATTAACCCAGTCCGTAACACAGAGGACAACCTGCGCATTTTCGCCATAAGTTCACTGTTACCTTCGTTCGGGTTCGATGCTTCAGCTCTTTTGTATCTTGAGGTTTGATTGTTATTTGTACGGAATTTGGGAGACTGGTGTCAACGCTGGGTTCCATGAAATTACGGGGTTTTGAACAAATACGCGTAAGGGCGGGCTTCGTTGTGTGATTTGTTTGAGACATCCGAAGGCAAGCCACACAGCAATAGTTTGCAGGCACAGGGAAGAGGAGGAAGAGGAGATTCAGACGACA_-_ATGGATAAGATGGACACAGCATTGGTGGAACAACCTCAGCCTATGGCAATTGAACAGTCAAATTTACAAGCTAACATGGAGCATGGAACATCGAAGATTGCCCCCATGAAGCCAAAATTTGAACCATTGACAGCTTATGAAATGTCTGGTGGCCGGCCTGAGTTTCGGAAGGTCTCTGTTCCAGCTCATAGATATGCGCCTCTGAAGAAAATGTGGATGGAAATTTATACTCCTGTTTATGAGCAGATGAAGATTGACATTCGGATGAATCTGAAGAACCGTAAAGTTGAATTGAAGTCACGGTTTGACACCCCAGAAATTGGTAACCTCCAAAAATGTGCTGATTTTGTCCACGCTTTTATGCTTGGTTTTGATGTACCTGATGCCATTGCGCTTTTGAGGTTGGATGATCTGTATGTTGAGACATTTGAGATTAAGGATGTGAAAACTCTGCAAGGAGAGCATCTTTCTCGAGCTATTGGCAGGTTAAGTGGAAAAGGCGGAAAGACAAAATTTGCAATTGAGAATTCAACAAGAACAAGAATTGTCATTGCTGAGTCAAAGATTCACATATTGGGATCTTTCTTGAATATTAAAGTTGCTAGAGATGCTTTATGTAGCCTTATTTTAGGATCTCCTGCAGGCAAGGTCTACTCAAAACTGAGAGCAGTGACTGCAAGAATGGCAGAGAAATTTTAA___GATCCTCGGCTATGTTAGCGTATTTCACCTTTTCTTTTTGTGTTTGGAAATATTTTATCCATTCTTATGGCGGTGTTTCCTATATGAAGAGTGATTACATGCATGCATAATGCATTTGCATAGAGCTTGGCGTCTTCTCTATAGTATTTTGTAATATTCATGATTAAAACATGCAAGAGAATTTATCTTTCTGGACTGAATTGAGTTGTAATAAGGTGGTGATATTGTTGAATTGTGGGAGTACATGTCGTAGCCATACATTTCATTATTGCTGCTTTTAATAATGTTTTACCTACAAGTTTATCTTTATTCATGTGGGGCGCATAAACTGAAAGGTCTACAGTAACAAGTTGTTTACTGTTTTGGTTATGTAAAATGATTAGATATGTTTCATTGTAGATGACCAGCAGTCATACTAACAAAATTCATAGCAAGCCGATTGCGTAGGCACAAGTTGAATAATCTTAACAGTCGCAATAGCTTTATGGAAACTCATCATATGCTCTGTTTACTTGGGCCTATATTGGATATGCCTTGTGCAGTTTCATGACAAAATAATAAAATACTACTTATCAATTTGCC

Fln Alignment:

Contig6249___MDTALVEQPQPMAIEQSNLQA-----NMEHGTSKIAPMKPKFEPLTAYEMSGGRPEFRKVSVPAHRYAPLKKMWMEIYTPVYEQMKIDIRMNLKNRKVELKSRFDTPEIGNLQKCADFVHAFMLGFDVPDAIALLRLDDLYVETFEIKDVKTLQGEHLSRAIGRLSGKGGKTKFAIENSTRTRIVIAESKIHILGSFLNIKVARDALCSLILGSPAGKVYSKLRAVTARMAEKF
A9NS94______________MQTALVEQPQPMAVEQSTLQATIGEADMQHGTSKIAPMKPRFEPLTAYEMSGGQPEFRKVSVPAHRYTPLKKIWMEIYTPVYEQMKIDIRMNLKTRKVELKSRLDTPEIGNLQKCADFVHAFMLGFDVPDAIALLRLDDLYVETFEIKDVKTLQGEHLSRAIGRLSGKGGKTKFAIENSTRTRIVIAESKIHILGSFLNIKVARDALCSLILGSPAGKVYSKLRAVTARMAEKF

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
133		16		83	0.994512
289	85		14		0.993533
544	79	2			1.0
587	95	4			0.996599
655	95		4		0.995881
662		95		4	0.996252
667		4		95	0.996252
692			5	94	0.997984
710	92		7		1.0
711	5	2		89	0.979359
713		8		91	1.0
714		5	94		0.998397
717			13	86	1.0
719		11		88	1.0
720	11	2		86	1.0
721	13			86	1.0
724		88	11		1.0
730	88		11		1.0
732		6		93	0.999264
949		25		75	0.996473
1337		3		96	0.993591
1428		93	6		0.999999
1449		6		93	0.999999
1489		89	3		0.998606
1496	88	11			1.0
1497	7	3		84	0.99801
1498	7	92			0.999664
1499		7	92		0.999664
1500	87	4	8		0.999414
1501	83	4		12	1.0
1503	13	86			1.0
1548	5	11		82	0.999919
1551		12		87	0.999964
1554	7	7	71		0.999974
1555			7	78	0.999974
1598	10	90			0.90298
1599	50	37	12		1.0
1600	62	37			1.0
1601	62	12			1.0
1603	12	75		12	0.975346
1604	14	85			0.993533
1605	28	57		14	1.0
1607	80		20		0.995493
1608	20			80	0.995493
1609		80	20		0.995493
1610		80		20	0.995493
1611		80	20		0.995493
1612	20			80	0.995493
1616	80	20			0.995493
1617	80	20			0.995493
1620	80		20		0.995493
1625		20		80	0.995493
1627	20			80	0.995493
1628		20		80	0.995493
1629			20	80	0.995493
1672		33	66		0.997452
1673	66	33			0.997452
1674	66	33			0.997452
1677	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain