SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6199

Length: 2654 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene6199
CGTCGTGACCTTGGCTGTCACTCAGAAATTTTATCGTGGGTGAATAAGAGTAGAAAAATTGAGGAGCATAAAAATGCTGAGAGGGAAAAAGCTGCACGTCTTGCCAGGATTTTTGAAGAGCAGGATAATGTGGAGGATACAGAAAGTGATGATGAAGAAAGGACAGTGCACAGTGGAAAGGATCTGGCAGGACTGAAGGTCCTTCATGGGCTTGATAAAGTAATGGAAGGAGGTGCAGTTGTATTGACACTCAAGGATCAAAATGTTCTTGCTGGTGATGATGTTAATGATGCGGTTGATATGCTTGAAAACATTGAAATTGGAGAGCAAAATGCAAGAAATGAAGCCTACAAAGCAGCAAAAAAGAAAACTGGGATCTATGTAGACAAATTTCAAAATGATATGAATACTGTGAAATCAATTCTTCCTCAATATGATGACCCTTTTAAGGAGGAGGGGGTGACTATAGATCAAATGGGAGGTATAAATGAAGAAGCCCATAACAAACTAGATGAGATACGCAAGAGGCTGCAAGGTGCAGCTATGACTAATCAAGCTGAAGAGTCACTGGCCCAACCGGGTACAGTTATTTCTGATTATTATACTCAAGAGGAAATGCTTCAATTCAAGAAACCTAAGAAGAAGAAAAAGTTGCGGAAGAAGGATAGGCTGGACATTGATGCACTGGAAGCAGAAGCAGTTGCTGCTGGATTGGGTTCTGGGGATCTTGGTTCTAGAGATGATACAGAAAGAAAGCTTTCCAGGGAAAATGCACTTAAGGCAGAAGCTGAACTCAGGAAAAGTGCATATCAAAATGCATACAAGAAGGCAGCAGAGGCTTCCAGAGGCCTTCGAGATGAGAAGTCATCAGATGCAATGCAGGTCGATGAAGATGGAGATGCTGTTTTGTGTGGAGGATCAAGATCTTTACAAGTCATTAGAGAAGGCCAGGCAAGCGGCACTGAAAAAGCAAGCAGAAAGTAGTGGGTCTGGCCCCCAGGCAGTAGCTCGTTTAGCAGTAGCCGCAAATCAGGCAAAAGGAAATGGTCAATCATCAAATGAAGTGCAGGAAAACAAAGTTATATTTACGGAGATGGAGGAATTTGTGTGGAGTTTACAGCTTGATGAAGATACTCACAAACCTGTAATTGAAGATGTCTTTAAAGAGGACGATGAGGGTCCAGGTCCTGTCAAACAAGACGATGTTGCCGAAGCCATAGGTGGTTGGACTGAGGTGAAGGAAATGGATTTAGATGTCAGTGATCAAAAAGCAGAAGAAGAGGAAGAAGTGGTGACAGATGAGATAATTAAAGAATCTTCTGTAGGTAAAGGTTTGGCTGGGGCCTTGCAACTGTTGAAGGAAAGGGGTGCATTGAAAGAGTCTGTGGAATGGGGTGGAAGGAATATGGATAAGAAAAAGAGCAAACTTGTTGGAGTTCGAGATAATGATGGACCAAAAGAGATACAGTTAGACCGTTTAGATGAGTTTGGTCGTATTATGACACCTAAAGAAGCTTTTCGGAAGCTGTCGCATAAGTTCCATGGTAAAAGGCCCTGGAAAAATGAAACAAGAAAAACGTATGAAACAGTATCAGGAGGAATTGAAGCTTAAGCAAATGAATACTGGGGACACCCCTCTGATGTCCATGGAAAAAATGCGTGACATCCAGGCCAAACTGCATACTCCTTATATCGTTCTCAGCGGTCAAATTAAACCAGGGCAAACAAGTGACCCACGAAGTGGTTTTGCCACTGTTGAAAAGGAGGTTCCAGGAAGCTTGACTCCGATGCTTGGTGACAGAAAGGTCGAGCATTTCTTAGGAATCAAGCGTAAATCTGAAGCTGGGACAATGGGTCCTCCGAAAAAACCAAAGACATGATATCGTTAGATTTGGCACTTCCCTGCATGAAGATTATGAGTCTTTTCGGGCCATGAATACTTTTGATGTCAAATGTGTTTTGCAGCCCTCATCTATGATATGGCCTTTAAGGCTCTTAGCTTTGCTGCCAATAGCAAGCTCAAAATTCAAGAAGAATATCATTATTTGTGCTGAGCAGGACCAGATTTTTTCAAATGAGTTTATGAGCTGTGACAGATTGAGCAGGTGGGAAATAAGATGTCAAAATGTTGATACTACAGGTCAGTATTTTGTATAGAGAATATAAAAGAATTGTGCTTTGCTGGACTTCTCAATGGTCATATGTATGGATATTGTGCATCAATTTTAATTTTGAGATTCTGGAGAGATCTCTGTTCAAAGTTTGAACTTTGAGGACATTGTTACGGTGTAGACTATTTTTGTTCTTTCAGGGATTCCTAGGTTATTCTATGGCTAAAGAGAAGAAATAACAATATCCACATGCTTCTTGACCAATGTTACTGGGAATTTTTAGAAAAGGTTTGCAACCTTTGACTCCATATCGATGCTTCACCTTTTAAGTTTTCAGGATGTTGTTTGGAAGTACATTTATATAATAAGCTTTTTACCCAGGTTACATTGCTAGTATCATTTTGTCTATTCTCAACATCAGGTAGCTGTGGTTTGGTGGTGATATGCACTGTTGAAACTTTTCCTTCAGGATTGCCAGGTTCTATAGAAACTCTCCTGGCCCCTTTTCCAATATATAAGAAAGCGTTTTCCTGAATCTGATTG

Ace file of the UniGene sp_v2.0_unigene6199

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U4/U6.U5 tri-snRNP-associated protein 1 [Arabidopsis thaliana] emb\|CAC01842.1\| putative protein [Arabidopsis thaliana] gb\|AED92337.1\| U4/U6.U5 tri-snRNP-associated protein 1 [Arabidopsis thaliana]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	57%
Blast2go	u4 tri-snrnp-associated protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	72%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	72%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	72%
Blast2go	meristem structural organization	GO:0009933	Biological Process	72%
Blast2go	leaf development	GO:0048366	Biological Process	72%
Blast2go	flower development	GO:0009908	Biological Process	72%
Blast2go	post-embryonic root development	GO:0048528	Biological Process	72%
Blast2go	nucleolus	GO:0005730	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	SART-1 protein	IPR005011	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A3A7A3

Fln msg: Separated hits, possible frame ERROR between 894 and 896, and overlapping frame ERROR between 1561 and 1548, your sequence is shorter than subject: 628 - 804

Fln protein: RRDLGCHSEILSWVNKSRKIEEHKNAEREKAARLARIFEEQDNVEDTESDDEERTVHSGKDLAGLKVLHGLDKVMEGGAVVLTLKDQNVLAGDDVNDAVDMLENIEIGEQNARNEAYKAAKKKTGIYVDKFQNDMNTVKSILPQYDDPFKEEGVTIDQMGGINEEAHNKLDEIRKRLQGAAMTNQAEESLAQPGTVISDYYTQEEMLQFKKPKKKKKLRKKDRLDIDALEAEAVAAGLGSGDLGSRDDTERKLSRENALKAEAELRKSAYQNAYKKAAEASRGLRDEKSSDAMQVDExxEMLFCVEDQDLYKSLEKARQAALKKQAESSGSGPQAVARLAVAANQAKGNGQSSNEVQENKVIFTEMEEFVWSLQLDEDTHKPVIEDVFKEDDEGPGPVKQDDVAEAIGGWTEVKEMDLDVSDQKAEEEEEVVTDEIIKESSVGKGLAGALQLLKERGALKESVEWGGRNMDKKKSKLVGVRDNDGPKEIQLDRLDEFGRIMTPKEAFRKLSHKFHxxxxxxxMKQEKRMKQYQEELKLKQMNTGDTPLMSMEKMRDIQAKLHTPYIVLSGQIKPGQTSDPRSGFATVEKEVPGSLTPMLGDRKVEHFLGIKRKSEAGTMGPPKKPKT*

Protein Length: 629

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAAATTTTATCGTGGGTGAATAAGAGTAGAAAAATTGAGGAGCATAAAAATGCTGAGAGGGAAAAAGCTGCACGTCTTGCCAGGATTTTTGAAGAGCAGGATAATGTGGAGGATACAGAAAGTGATGATGAAGAAAGGACAGTGCACAGTGGAAAGGATCTGGCAGGACTGAAGGTCCTTCATGGGCTTGATAAAGTAATGGAAGGAGGTGCAGTTGTATTGACACTCAAGGATCAAAATGTTCTTGCTGGTGATGATGTTAATGATGCGGTTGATATGCTTGAAAACATTGAAATTGGAGAGCAAAATGCAAGAAATGAAGCCTACAAAGCAGCAAAAAAGAAAACTGGGATCTATGTAGACAAATTTCAAAATGATATGAATACTGTGAAATCAATTCTTCCTCAATATGATGACCCTTTTAAGGAGGAGGGGGTGACTATAGATCAAATGGGAGGTATAAATGAAGAAGCCCATAACAAACTAGATGAGATACGCAAGAGGCTGCAAGGTGCAGCTATGACTAATCAAGCTGAAGAGTCACTGGCCCAACCGGGTACAGTTATTTCTGATTATTATACTCAAGAGGAAATGCTTCAATTCAAGAAACCTAAGAAGAAGAAAAAGTTGCGGAAGAAGGATAGGCTGGACATTGATGCACTGGAAGCAGAAGCAGTTGCTGCTGGATTGGGTTCTGGGGATCTTGGTTCTAGAGATGATACAGAAAGAAAGCTTTCCAGGGAAAATGCACTTAAGGCAGAAGCTGAACTCAGGAAAAGTGCATATCAAAATGCATACAAGAAGGCAGCAGAGGCTTCCAGAGGCCTTCGAGATGAGAAGTCATCAGATGCAATGCAGGTCGATGAAGAxxxGGAGATGCTGTTTTGTGTGGAGGATCAAGATCTTTACAAGTCATTAGAGAAGGCCAGGCAAGCGGCACTGAAAAAGCAAGCAGAAAGTAGTGGGTCTGGCCCCCAGGCAGTAGCTCGTTTAGCAGTAGCCGCAAATCAGGCAAAAGGAAATGGTCAATCATCAAATGAAGTGCAGGAAAACAAAGTTATATTTACGGAGATGGAGGAATTTGTGTGGAGTTTACAGCTTGATGAAGATACTCACAAACCTGTAATTGAAGATGTCTTTAAAGAGGACGATGAGGGTCCAGGTCCTGTCAAACAAGACGATGTTGCCGAAGCCATAGGTGGTTGGACTGAGGTGAAGGAAATGGATTTAGATGTCAGTGATCAAAAAGCAGAAGAAGAGGAAGAAGTGGTGACAGATGAGATAATTAAAGAATCTTCTGTAGGTAAAGGTTTGGCTGGGGCCTTGCAACTGTTGAAGGAAAGGGGTGCATTGAAAGAGTCTGTGGAATGGGGTGGAAGGAATATGGATAAGAAAAAGAGCAAACTTGTTGGAGTTCGAGATAATGATGGACCAAAAGAGATACAGTTAGACCGTTTAGATGAGTTTGGTCGTATTATGACACCTAAAGAAGCTTTTCGGAAGCTGTCGCATAAGTTCCATGxxxxxxxxxxxxxxxxxxAAATGAAACAAGAAAAACGTATGAAACAGTATCAGGAGGAATTGAAGCTTAAGCAAATGAATACTGGGGACACCCCTCTGATGTCCATGGAAAAAATGCGTGACATCCAGGCCAAACTGCATACTCCTTATATCGTTCTCAGCGGTCAAATTAAACCAGGGCAAACAAGTGACCCACGAAGTGGTTTTGCCACTGTTGAAAAGGAGGTTCCAGGAAGCTTGACTCCGATGCTTGGTGACAGAAAGGTCGAGCATTTCTTAGGAATCAAGCGTAAATCTGAAGCTGGGACAATGGGTCCTCCGAAAAAACCAAAGACATGATATCGTTAGATTTGGCACTTCCCTGCATGAAGATTATGAGTCTTTTCGGGCCATGAATACTTTTGATGTCAAATGTGTTTTGCAGCCCTCATCTATGATATGGCCTTTAAGGCTCTTAGCTTTGCTGCCAATAGCAAGCTCAAAATTCAAGAAGAATATCATTATTTGTGCTGAGCAGGACCAGATTTTTTCAAATGAGTTTATGAGCTGTGACAGATTGAGCAGGTGGGAAATAAGATGTCAAAATGTTGATACTACAGGTCAGTATTTTGTATAGAGAATATAAAAGAATTGTGCTTTGCTGGACTTCTCAATGGTCATATGTATGGATATTGTGCATCAATTTTAATTTTGAGATTCTGGAGAGATCTCTGTTCAAAGTTTGAACTTTGAGGACATTGTTACGGTGTAGACTATTTTTGTTCTTTCAGGGATTCCTAGGTTATTCTATGGCTAAAGAGAAGAAATAACAATATCCACATGCTTCTTGACCAATGTTACTGGGAATTTTTAGAAAAGGTTTGCAACCTTTGACTCCATATCGATGCTTCACCTTTTAAGTTTTCAGGATGTTGTTTGGAAGTACATTTATATAATAAGCTTTTTACCCAGGTTACATTGCTAGTATCATTTTGTCTATTCTCAACATCAGGTAGCTGTGGTTTGGTGGTGATATGCACTGTTGAAACTTTTCCTTCAGGATTGCCAGGTTCTATAGAAACTCTCCTGGCCCCTTTTCCAATATATAAGAAAGCGTTTTCCTGAATCTGATTG

Fln Alignment:

Contig6199___DLGCHSEILSWVNKSRKIEEHKNAEREKAARLARIFEEQDNV--EDTESDDEERTVHS--GKDLAGLKVLHGLDKVMEGGAVVLTLKDQNVLAGDDVNDAVDMLENIEIGEQNARNEAYKAAKKKTGIYVDKFQNDMNTVKSILPQYDDPFKEEGVTIDQMGGINEEAHNKLDEIRKRLQGAAMTNQAEESLAQPGTVISDYYTQEEMLQFXXXXXXXXXXXXXXXXIDXXXXXXXXXXXXXXXXXXXXXTERKLSRENALKAEAELRKSAYQNAYKKAAEASRGLRDEKSSDAMQVDEDxEMLFCVEDQDLYKSLEKARQAALKKQAESSGSGPXXXXXXXXXXXXXKGNGQSSNEVQENKVIFTEMEEFVWSLQLDEDTHKPVIEDVFKEDDEGPGPVKQDDVA-EAIGGWTEVKEMDLDVSDQKAXXXXXXXXXXXXXXSSVXXXXXXXXXXXXERGALKESVEWGGRNMDKKKSKLVGVRDNDGPKEIQLDRLDEFGRIMTPKEAFRKLSHKFHGxxxxxMKQEKRMKQYQEELKLKQMNTGDTPLMSMEKMRDIQAKLHTPYIVLSGQIKPGQTSDPRSGFATVEKEVPGSLTPMLGDRKVEHFLGIKRKSEAGTM--GPPKKPK
A3A7A3______________DNGGDGEILSWVGKSRKLDEKRQAEKEKALHRARALEEQDNILAENDEDDDEEQQEDNRVGEHLSGVKVLHGLDKVLEGGAVVMTLKDQSILADGDINQEADMLENIEIGEQKQRNEAYKAAKKK-GTYDDKFNDDPLSKKSILSQYDDPMEDEGVTLDEGGRFSGEAEKKLEELRKRIEGGFVQKKTED-LTSAAKMSSDYYTPDEMLQFKKPKKKKSLRKKEKLDLDALESEAIAAGLGTGDLGSRKDARRQAAREEEQKADAEKRNYAYQAAIAKAEEASKALRPEKNISGKHAESExELVFGEDYEDLQKSLEQARKLALRKQEETAASGPLAVAELATARIGQKDADAAEGDAQQNKVVITEMEEFVWGLQLNEETRKPEAEDVFMDEDD--DMIMSDTVAKDDMSGLAVVKEETSVEVPVKNEEEEELKPDEIVHEAAVGKGLAGALKFLKERGTLNEGTDWGGRTTDKKKSKLAGI--EDGPKDIRIERIDEFGRVMTPKEAFRDLSHKFHGxxxxxMKQERRQKKYRDELKTKRMISSDTPLMSAEKMREAQALSKTPYLVLSGNAKSGQTSD-ASGFATVEKEHPGSLTPMLGAKKVEHFLGIKRSAQGGGLPPPPPKKPK

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
267	11			88	0.923564
268		11		88	0.923564
269	11	88			0.923564
496	83			16	0.994512
498		83	16		0.994512
499		83	16		0.994512
530	14	85			0.993533
534	85		14		0.993533
535	85		14		0.993533
594	14	85			0.993533
597	85		14		0.993533
598			14	85	0.993533
939	33	66			0.997452
1038	25		75		0.996473
1094		80		20	0.995493
1097	80		20		0.995493
1176		60		40	1.0
1273	75			25	0.996473
1274	75		25		0.996473
1275	75		25		0.996473
1276	75		25		0.996473
1295	20		80		0.995493
1307	16		83		0.994512
1310	83			16	0.994512
1341	20			80	0.995493
2276	80	20			0.995493
2312		25		75	1.0
2315		28		71	1.0
2316		71	28		1.0
2319	22			77	0.999999
2320		22		77	0.999999
2322	77			22	0.999999
2323			77	22	0.999999
2326	77	22			0.999999
2335		22	77		0.999999
2336	22		77		0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain