SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6196

Length: 1980 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene6196
AATGTATTTTCCTAAGGATTCTTTTACTTCTTTAAAAGACATTGTCAATGCTTTTGAAGATAGATATTGTTATCCGGTCAGCTTGCCTTCTACATCTAAAATTGTGCAACAGAATGAAAGTAATTTGATAAAAGGTCCAGCTGATGGTGAAAGATCCCAAGACGATTCTTCATGTCAAAATGTGTCATCCACCGGAAATATTGCAGATCAAGTTCATGATAGTGAAATGGAGGAACAAAAGCAAATTATACGAGATCTAATGATGCTAGTGAAAAATATGGAAAGCAATCAAAATAGTTATGTCAATGATGTCAGAATTTTATGCACCCATCTGGAGAAATGTAATAGGGAGATGTAGGTCACACAAAATCAGCATGCTAAAGAAATTGAGGCCATGAAAATTAAATATGAAACAGAAATTAGAAGCATGCAAAGCAAGATGTCAGGATTAGAGGAAAATATGGTGACCATGAAAGCTGATCATGATAGGGAAATTGATTCTATGCAAAACAAGTTATTAACTATGGATGAGGAAATGACTATCATGACGTTCAATCATAATAATCAGTTGGCTGACATGCAAGCAATTCATGAAGAAGAAATAAATTCCATGCAGCATTGCTTAATGGACATAAAGGAGGAGAATGTTAAAGTAATAAAAGACATGGAAGAACATCATGCCAGACAAATCAGTGCTATAAAGGTTGAACACTCTAGACAGATGGATGCCATTAGAATACAGGTTCAAAAGTTTCAGCAATTGGAAGATGAAAGAAACCAGGTAACATCAATAGATCAGGAGCCTTCTCATTTGTTGCAACAAGCTCCATCTTATTATGAGGAGGTTATTAGTTCAGTTGAAAGATGGTCGATTGAAGGTGATCCAGATAGACTTAAGAATGATAAAGATCAGATGCAGGATAAAGAAAGACATATCACGCATACTTCATCTGATAGTTTTGAAACAGAAAGTTCCAGGTCATCAGTAATTCCACCTGCCAGAAAGAAAAAACGTAAGAGAAAGAAGAATGAGACGAAGATTTGATGCATCAGACGGCCGCGAGCTGCTTGATTTTCGGATAGGAAAAAGTCCTACCATATGCAAAATTGGACATGGCACATCCGACAAGCAGCCGACAGATTTGCCTGAAAGCAGGCAAATGCTCAGTATGCACTATATTGAACACATCTGATGCCGTGGGGCATTTTTTGTATTGTATTTCTAACTCTACTCCTCGTCTTTTCAGCATTTCATTTCTGTTTTAGGATTAGATTTACTTTTCATGTTATTAGATAGTTAATAAATGAAGAGCTTTTATCTTTCCTGTGCTTAATGTATATGCTGATTTTTTGGATGGACGCTACTTATTTTTGTGTTGTATGGATGCAGATTCTGGATTCTCACATTCCTGCAAGCAGCAACGTGTCCCCAAGTAGAGCCAGATGTTGACCACTACTGGTCAACTACCCATGCAGTACACCCCCCTTTTCTTGGCAAAAAGGGGCAGCACCTGATCAGCATGTCCGTGCCATCCTGCCATCATCAGCAACTTGATCTTTTTGATTGTAAACCCAGTCTGCATGTATTAATTGTAAATAATCTTAGCAGACATGAGTCATGTATGTAATTTGCCTAGGTGGACCTAACTTTCTGATGATAATCTACGTCCCGGAAGGTTTTTCGTCTCACCGATCCACGGATCGGCAGAGTTTTCCTTCAAACCTGACCCCAAAGCCGGGATGCATTTTGTCATTAGAACTTTAGGAGAATCCTAGTGTGTTGATCTGCTAGATTATAGTTGTGTCGCAGAACTGGGTGATTTATGAGGGTCTGTATTAAGTAAGATGGAATTTTGTAAAATTCATGATGTAATGTGTCTTGAGGGTTGAAGGATGTTCTAAATCCCCTCGTGAGTCCTGAGTCCTAGGTCCTAGGTGATGTCTCCGAAGGTTTAGTTCGATGATCCATTTTGAAATGAA

Ace file of the UniGene sp_v2.0_unigene6196

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Viral A-type inclusion protein, putative n=1 Tax=Trichomonas vaginalis RepID=A2DA80_TRIVA	-	-	2.0e-08	20%
FL-Next	tr=Homology to unknown gene; Ostreococcus tauri.	-	-	0.0	22%
Blast2go	ww domain containing protein	-	-	4.26904e-08	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q00VG0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 325 aas, your sequence is shorter than subject: 348 - 1536

Fln protein: MYFPKDSFTSLKDIVNAFEDRYCYPVSLPSTSKIVQQNESNLIKGPADGERSQDDSSCQNVSSTGNIADQVHDSEMEEQKQIIRDLMMLVKNMESNQNSYVNDVRILCTHLEKCNREM*VTQNQHAKEIEAMKIKYETEIRSMQSKMSGLEENMVTMKADHDREIDSMQNKLLTMDEEMTIMTFNHNNQLADMQAIHEEEINSMQHCLMDIKEENVKVIKDMEEHHARQISAIKVEHSRQMDAIRIQVQKFQQLEDERNQVTSIDQEPSHLLQQAPSYYEEVISSVERWSIEGDPDRLKNDKDQMQDKERHITHTSSDSFETESSRSSVIPPARKKKRKRKKNETKI*

Protein Length: 349

Fln nts: AATGTATTTTCCTAAGGATTCTTTTACTTCTTTAAAAGACATTGTCAATGCTTTTGAAGATAGATATTGTTATCCGGTCAGCTTGCCTTCTACATCTAAAATTGTGCAACAGAATGAAAGTAATTTGATAAAAGGTCCAGCTGATGGTGAAAGATCCCAAGACGATTCTTCATGTCAAAATGTGTCATCCACCGGAAATATTGCAGATCAAGTTCATGATAGTGAAATGGAGGAACAAAAGCAAATTATACGAGATCTAATGATGCTAGTGAAAAATATGGAAAGCAATCAAAATAGTTATGTCAATGATGTCAGAATTTTATGCACCCATCTGGAGAAATGTAATAGGGAGATGTAGGTCACACAAAATCAGCATGCTAAAGAAATTGAGGCCATGAAAATTAAATATGAAACAGAAATTAGAAGCATGCAAAGCAAGATGTCAGGATTAGAGGAAAATATGGTGACCATGAAAGCTGATCATGATAGGGAAATTGATTCTATGCAAAACAAGTTATTAACTATGGATGAGGAAATGACTATCATGACGTTCAATCATAATAATCAGTTGGCTGACATGCAAGCAATTCATGAAGAAGAAATAAATTCCATGCAGCATTGCTTAATGGACATAAAGGAGGAGAATGTTAAAGTAATAAAAGACATGGAAGAACATCATGCCAGACAAATCAGTGCTATAAAGGTTGAACACTCTAGACAGATGGATGCCATTAGAATACAGGTTCAAAAGTTTCAGCAATTGGAAGATGAAAGAAACCAGGTAACATCAATAGATCAGGAGCCTTCTCATTTGTTGCAACAAGCTCCATCTTATTATGAGGAGGTTATTAGTTCAGTTGAAAGATGGTCGATTGAAGGTGATCCAGATAGACTTAAGAATGATAAAGATCAGATGCAGGATAAAGAAAGACATATCACGCATACTTCATCTGATAGTTTTGAAACAGAAAGTTCCAGGTCATCAGTAATTCCACCTGCCAGAAAGAAAAAACGTAAGAGAAAGAAGAATGAGACGAAGATTTGATGCATCAGACGGCCGCGAGCTGCTTGATTTTCGGATAGGAAAAAGTCCTACCATATGCAAAATTGGACATGGCACATCCGACAAGCAGCCGACAGATTTGCCTGAAAGCAGGCAAATGCTCAGTATGCACTATATTGAACACATCTGATGCCGTGGGGCATTTTTTGTATTGTATTTCTAACTCTACTCCTCGTCTTTTCAGCATTTCATTTCTGTTTTAGGATTAGATTTACTTTTCATGTTATTAGATAGTTAATAAATGAAGAGCTTTTATCTTTCCTGTGCTTAATGTATATGCTGATTTTTTGGATGGACGCTACTTATTTTTGTGTTGTATGGATGCAGATTCTGGATTCTCACATTCCTGCAAGCAGCAACGTGTCCCCAAGTAGAGCCAGATGTTGACCACTACTGGTCAACTACCCATGCAGTACACCCCCCTTTTCTTGGCAAAAAGGGGCAGCACCTGATCAGCATGTCCGTGCCATCCTGCCATCATCAGCAACTTGATCTTTTTGATTGTAAACCCAGTCTGCATGTATTAATTGTAAATAATCTTAGCAGACATGAGTCATGTATGTAATTTGCCTAGGTGGACCTAACTTTCTGATGATAATCTACGTCCCGGAAGGTTTTTCGTCTCACCGATCCACGGATCGGCAGAGTTTTCCTTCAAACCTGACCCCAAAGCCGGGATGCATTTTGTCATTAGAACTTTAGGAGAATCCTAGTGTGTTGATCTGCTAGATTATAGTTGTGTCGCAGAACTGGGTGATTTATGAGGGTCTGTATTAAGTAAGATGGAATTTTGTAAAATTCATGATGTAATGTGTCTTGAGGGTTGAAGGATGTTCTAAATCCCCTCGTGAGTCCTGAGTCCTAGGTCCTAGGTGATGTCTCCGAAGGTTTAGTTCGATGATCCATTTTGAAATGAA

Fln Alignment:

Contig6196___LPSTSKIVQQNESNLIKGPADGERSQDDSSCQNVSSTGNIADQVHDS------EMEEQKQIIRDLMMLVKNMESNQNSYVNDVRILCTHLEKCNREM*VTQNQ---HAKEIEAMKIKYETEIRSMQSKMSGLEENMVTMKADHDREIDSMQNKLLTMDEEMTIMTFNHNNQLADMQAIHEEEINSMQHCLMDIKEENVKVIKDMEEHHARQISAIKVEHSRQMDAIRIQVQKF----QQL-------EDERNQVTS-IDQEPSHLLQQAPSYYEEVISSVERWSIEGDPDRLKNDKDQMQ
Q00VG0______________LESESKELDETQSKL-----DDESKELDATESKVDSESKELDETQSKLESESKELDETQSKLDDESKELDATESKVDSESKELDETQSKLESESKELDETQSKLDDESKELDATESKVDSESKELDETQSKLESE--------SKELDATETKLDEETNKLTDATSKHDSAINQLQQRVEEENTELDATQSKLEDETSK-LKETVTDHGMQLEKLKLRDDELNDGLKDAQVKFDGETQQLGKRIDEARDELNAATSRIDDETKELKEFSSKNGGRIDEALE--AISGNREAMEANREAME

SNPs (tot: 99)

Position	A %	C %	G %	T %	Probability
763	33			66	0.997452
768	66		33		0.997452
769	33		66		0.997452
875	25		75		0.996473
882	25		75		0.996473
883	50		50		1.0
889		75		25	0.996473
890	75		25		0.996473
924		50	50		1.0
927	75		25		0.996473
943		75		25	0.996473
944	50		50		1.0
967	66	33			0.997452
969	66		33		0.997452
970		66		33	0.997452
981	66		33		0.997452
982			66	33	0.997452
983	33		66		0.997452
1003	33	66			0.997452
1035	33		33		0.997753
1039	33	66			1.0
1043	25		75		0.996473
1050		25		75	0.996473
1051	50		50		1.0
1052	25	50		25	0.995533
1059		80		20	0.995493
1063		80		20	0.995493
1070	40			60	1.0
1083	20		80		0.995493
1109	85		14		0.999981
1140	7	21	71		1.0
1158		85		14	0.999981
1176	14		78	7	0.999974
1181	76			23	1.0
1196	23		76		1.0
1202	30		69		1.0
1211		50		50	1.0
1212		50		50	1.0
1220		30		70	1.0
1232		37		50	1.0
1236		85		14	0.993533
1241		40		60	1.0
1244		80		20	0.995493
1245	40			60	1.0
1250	80	20			0.995493
1317		80		20	0.995493
1318		20		60	0.99255
1336		20		80	0.995493
1337	80	20			0.995493
1347	66	33			0.997452
1351		33	33	33	0.997753
1352		33		66	1.0
1353		33		66	1.0
1354	33			66	1.0
1373	11			77	0.968132
1375			11	88	0.923564
1376			11	88	0.923564
1377			11	88	0.923564
1380	11		88		0.923564
1397		11		88	0.923564
1398	11	77		11	0.968132
1419	90		10		0.90298
1423	20		80		0.999996
1433		90	10		0.90298
1457	87			12	0.999964
1458		81	18		1.0
1482	90			10	0.90298
1487		75		25	0.996473
1488	25	75			0.996473
1490		50		50	1.0
1500			75	25	0.996473
1501		25	75		0.996473
1503	75	25			0.996473
1505	75			25	0.996473
1510			66	33	0.997452
1512		66		33	0.997452
1517		66		33	0.997452
1744	14		85		0.993533
1750		71	28		1.0
1766		71		28	1.0
1769		14		85	0.993533
1781	85			14	0.993533
1788		14		85	0.993533
1789	28		71		1.0
1790	85		14		0.993533
1814	14	85			0.993533
1815	85		14		0.993533
1816	28		71		1.0
1826	80		20		0.995493
1828		60		40	1.0
1830	60		40		1.0
1832	25		75		0.996473
1854			75	25	0.996473
1855			25	75	0.996473
1856	75			25	0.996473
1898	25		50	25	0.995533
1900	75		25		0.996473
1901			25	75	0.996473
1947	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain