SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6186

Length: 1008 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6186 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cupin_1 multi-domain protein	-	-	7.0e-23	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	germin-like protein	-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	74%
Blast2go	nutrient reservoir activity	GO:0045735	Molecular Function	74%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%
Blast2go	apoplast	GO:0048046	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Cupin 1	IPR006045	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
156		33		66	0.997452
189		33		66	0.997452
205		33		66	0.997452
306			16	83	0.994512
334		11		88	0.923564
356		10		90	0.90298
588	91	2			0.995912
729	85		14		0.993533
742	85	14			0.993533
744		14	85		0.993533
745	14			85	0.993533
906		97	2		0.960269
907	97			2	0.962263
937	64			33	1.0
951	4			95	0.999979
953	4	95			0.999981
955	30	64			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain