SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6173

Length: 732 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6173

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	9.99967e-42	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	tmv resistance protein n	-	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	61%
Blast2go	cellular process	GO:0009987	Biological Process	61%
Blast2go	catalytic activity	GO:0003824	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
223	66			33	0.997452
230	66		33		0.997452
279	66		33		0.997452
300		66		33	0.997452
305	66		33		0.997452
313		25	75		0.996473
319	50		50		1.0
320	50		50		1.0
322		50		50	1.0
333		50	50		1.0
340		50	50		1.0
341	25			75	0.996473
365		75	25		0.996473
370		25	75		0.996473
377		75	25		0.996473
397		75	25		0.996473
402		66		33	0.997452
403	33	66			0.997452
590	66			33	0.997452
592		33	66		0.997452
649	33	66			0.997452
664	66			33	0.997452
674		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
13	27	TTCTG TTCTG TTCTG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain