SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6089

Length: 1035 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6089

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rudimentary enhancer [Glycine max]	-	-	7.00649e-43	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	99%
Blast2go	enhancer of rudimentary	-	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	inflorescence morphogenesis	GO:0048281	Biological Process	93%
Blast2go	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	93%
Blast2go	regulation of cell adhesion	GO:0030155	Biological Process	93%
Blast2go	regulation of cell division	GO:0051302	Biological Process	93%
Blast2go	cell cycle	GO:0007049	Biological Process	93%
Blast2go	stomatal complex morphogenesis	GO:0010103	Biological Process	93%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	93%
Blast2go	regulation of cell growth	GO:0001558	Biological Process	93%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	93%
Blast2go	transpiration	GO:0010148	Biological Process	93%
Blast2go	plant-type cell wall organization	GO:0009664	Biological Process	93%
Blast2go	defense response to fungus	GO:0050832	Biological Process	93%
Blast2go	transmembrane receptor protein kinase activity	GO:0019199	Molecular Function	93%
Blast2go	mitochondrion	GO:0005739	Cellular Component	93%
Blast2go	regulation of organ morphogenesis	GO:2000027	Biological Process	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Enhancer of rudimentary	IPR000781	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
154		11		88	0.923564
158			11	88	0.923564
161	11			88	0.923564
165		88		11	0.923564
166			11	88	0.923564
167	88		11		0.923564
169		88		11	0.923564
171		88		11	0.923564
173	11		88		0.923564
174		11		88	0.923564
178	11			88	0.923564
208		11		88	0.923564
211	78			21	1.0
213	85		14		0.999981
214		85	14		0.999981
215		85	14		0.999981
452	10	85	5		0.999793
454		10	90		0.999898
616			92	7	0.999602
905	11		88		0.923564
915		20		80	1.0
944		15		84	0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain