SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6058

Length: 1388 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6058 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FCA gamma [Pisum sativum]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	rna binding abscisic acid binding protein	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	embryo sac development	GO:0009553	Biological Process	66%
Blast2go	regulation of flower development	GO:0009909	Biological Process	66%
Blast2go	chromatin silencing by small RNA	GO:0031048	Biological Process	66%
Blast2go	embryo development	GO:0009790	Biological Process	66%
Blast2go	RNA binding	GO:0003723	Molecular Function	66%
Blast2go	abscisic acid binding	GO:0010427	Molecular Function	66%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Gliadin, alpha/beta	IPR001376	-	-
Sma3	Gliadin/LMW glutenin	IPR001954	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3		IPR003612	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015903	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P010

Fln msg: STOP codon was not found. Distance to subject end: 213 aas, Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 348 - 151

Fln protein: SAHITRGIGPIQVRYADGERERLVEYKLFVGSLNKQATEKEIEEIFAPYGRVDDVYIMRDEQKQSRGCAFVKYPSRDMANAAVNALSGIFTMKGCDQPLTVRFADPKRPRPGDTRSGPAYGGPGFGPRPQGPLGARPGSGSGGQMGGRGPPTNWRPMGTPNMGAPAHVSARPYGSPLTPRGGTAGAPSAMVGTVGGPGGPMNGSLQGAGIGTPASQQQSFNPPLAHQQIQTYGQQPTSLQKPLQMQQQLAPSMQQQHQQPQQSYSQVQQSQQSIQQFGQHLQSPQPAVQQQPSLGQLSSSQQSLPVYGQPPVSQPQMQPHVSPALQQVPSSLQQQQHHLPITALQQQK

Protein Length: 349

Fln nts: GTTGTTCGATGAACATAATCAAGTATTGGTAATTTCCATGTTCTATTGTTGTGGACGGTTAAAGCAGTTGATAGAGAATAATTATATTTCTATTTTCAATGTATAAGGGTACATGCTAGTTACGTTTTAGTTGTGCACATAATCCATTGACAATTAGCTTTTTGTTTGGCGAAATTTGGTCCTATCTAACTGAAACTGCCAGCGAGAATGAATTTGATTATTGTGTGAAATCTATATTGCTCATTGCATATTGTATCCACAAATTGTTACCTTGCTACAGGATGTTGTTTTATCAAGTATGCAACTATTGAGGAAGCAGACAGAGCAATAAGAGCTTTGCATAATCAGCGCACATTACCAGGGGTATAGGTCCAATACAAGTTAGATATGCTGATGGAGAGCGTGAACGCCTTGTGGAGTATAAATTGTTTGTTGGCTCGCTAAATAAGCAAGCTACAGAAAAAGAAATTGAAGAGATATTTGCCCCATATGGGCGTGTTGATGATGTGTACATTATGAGAGATGAACAAAAGCAGAGCAGAGGCTGTGCTTTTGTAAAGTACCCATCCAGGGATATGGCAAATGCAGCCGTGAATGCTTTAAGTGGGATATTTACCATGAAGGGATGCGACCAGCCATTGACTGTACGGTTTGCTGACCCTAAAAGACCTAGACCCGGAGACACAAGATCTGGTCCTGCTTATGGAGGCCCAGGCTTTGGTCCTCGACCACAGGGGCCACTAGGGGCTAGGCCTGGTTCTGGTTCAGGAGGGCAAATGGGCGGACGTGGTCCACCTACAAATTGGCGTCCCATGGGAACACCAAACATGGGGGCACCAGCACATGTTAGTGCTCGTCCGTATGGAAGCCCGTTGACTCCCAGAGGGGGTACTGCTGGGGCCCCTTCCGCAATGGTTGGAACAGTGGGTGGCCCTGGAGGTCCTATGAATGGTTCTCTTCAAGGGGCCGGAATAGGAACTCCGGCTTCTCAGCAGCAGAGCTTCAATCCACCTCTTGCACATCAACAAATACAGACATATGGGCAGCAGCCTACATCGTTGCAGAAACCACTTCAGATGCAGCAGCAGTTGGCACCATCTATGCAGCAACAACATCAGCAACCTCAACAGTCTTATTCACAAGTTCAACAGTCCCAGCAATCTATACAACAGTTTGGGCAACATTTGCAATCTCCACAGCCAGCTGTGCAGCAGCAACCTTCGCTTGGTCAGTTATCCTCATCACAACAGTCATTGCCAGTATATGGTCAACCACCAGTTTCTCAGCCTCAAATGCAGCCGCATGTTAGCCCAGCACTGCAGCAAGTTCCTTCTAGTTTGCAGCAGCAGCAGCACCACTTGCCAATAACTGCTCTTCAGCAGCAGAAG

Fln Alignment:

Contig6058___KLFVGSLNKQATEKEIEEIFAPYGRVDDVYIMRDEQK-QSRGCAFVKYPSRDMANAAVNALSGIFTMKGCDQPLTVRFADPKRPRPGDTRSGP
A9P010______________KLFVSGLSKRTTDEGLREAFSKFGRVLEARVVTDKMNGVSKGFAFVRYATQEEADKGKEGMDGKF-LDG-----WVIFADYARPRPPRTYDNP

SSRs (tot: 1)

Start position	End position	Sequence	Length
35	49	TGC TGC TGC TGC TGC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain