SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6057

Length: 878 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6057 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SRC2 protein n=1 Tax=Taiwania cryptomerioides RepID=A7XAJ8_9CONI	-	-	5.0e-40	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	src2-like protein	-	-	0.0	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	54%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	0.0	54%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Actin-binding FH2	IPR015425	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
271	85		14		0.993533
272		85		14	0.993533
282		14	85		0.993533
468	33		66		0.997452
604		11		88	0.923564
606		88	11		0.923564
626	88		11		0.923564
646		87		12	0.992554
655	12	87			0.992554
708		50		50	1.0
750		50		50	1.0
752		66		33	1.0
767		50		50	1.0
796	50		50		1.0
816	16	16	66		0.988813
817	83	16			0.994512
827		20	80		0.995493
828	80	20			0.995493
829		20	80		0.995493
830		20		80	0.995493
831	20		20	60	0.99255
832	40			60	1.0
833		20	60	20	0.99255
837	75	25			0.996473
838	25			75	0.996473
839	25		75		0.996473
843		25	75		0.996473
844	33		66		0.997452
845	66	33			0.997452
848		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain