SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6022

Length: 1344 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6022

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S006_RICCO	-	-	5.0e-10	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	dna binding	-	-	0.0	46%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT71

Fln msg:

Fln protein: MGEEKEKTKSKCSRCEKERCCLHHLKVEGLYQLLCSSCVLVTHCHMYCPYCLDDCGSSSEGLLKCSACPRSVHVNCQHMAAATLPMAVPMSEPFLCPHCQNPNSDVMPFALLNSHRQGPPNKKLKGAHGRPVNSQSDFVSAKVVLTAARIASTSMHSVAATASAEAQKRAMEAARLRKEAKEAIHRALNVATEEESKAHATNPSTATPTSFTSNADKMNSEIVSQNLATGSLTSMPMTKATIAGEPNGPAR*

Protein Length: 253

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTCTCGGCGACGAGGTTTGTTACTTCTTTTTACTTCTTTTTAATTATTTCGAGTCTGCCAAGGAGGGGAGCGCGGTTCGAATCTCCATATTGCCTGCGTATCTACACTCAGTGGAGTTCAAATCATCGGAGAAGGTTAGTTATTAAAAAAAATCCATAACGAAGAAACTGGTGAAACAGTAGAGACAGAGAACCGAAGAACATGATTGAAGAAATGTAAGTGTGGAGAGAG_-_ATGGGGGAGGAGAAGGAGAAGACCAAGTCCAAGTGCAGTCGCTGCGAGAAGGAGAGGTGCTGCCTTCATCATCTCAAGGTAGAGGGCCTGTACCAACTCCTCTGCAGCTCCTGTGTCCTTGTGACTCATTGTCACATGTACTGCCCCTATTGTCTAGACGACTGCGGTAGCTCCTCCGAGGGTCTCTTGAAATGCTCCGCCTGTCCTCGTAGCGTCCATGTCAATTGCCAGCACATGGCGGCCGCCACTCTGCCCATGGCAGTGCCGATGAGCGAACCCTTCTTGTGTCCGCACTGCCAGAACCCTAATTCTGATGTCATGCCCTTTGCCCTGCTGAACAGCCACAGACAAGGACCCCCTAACAAGAAGCTCAAGGGCGCCCACGGTCGCCCCGTTAATTCGCAGTCGGATTTTGTCTCGGCCAAAGTGGTCTTAACCGCGGCTAGAATTGCATCCACTTCGATGCACAGCGTCGCGGCAACTGCGAGCGCGGAGGCCCAGAAGAGGGCCATGGAGGCCGCTCGGCTGAGGAAGGAGGCTAAAGAGGCCATCCACAGAGCGCTCAATGTAGCCACGGAGGAAGAGTCCAAAGCGCATGCAACCAACCCTAGTACAGCTACCCCTACATCCTTTACCTCGAATGCAGATAAGATGAATTCTGAAATCGTCAGTCAAAACTTGGCTACCGGTTCGTTGACTTCTATGCCCATGACCAAAGCAACAATAGCTGGTGAGCCAAATGGGCCAGCACGATGA___AGCTTCTTGTACATTTTTGTAAGTGAACTGTGACTCTAGCTTTGAGATCTTGGCAGACATTCTGCACGGGGATTTTTTTATTACTATAAAGGATGTTGGCACTTTATGCCCATGCCCTGATTGCCTCTTAATTTTTATGCCTATCTGGATGCTTAGGCTCGTTCCTCATGAAGGATCTTTGTGATAGCCCAACCACTGGGTTTGTTGGTTAAGAAAGGCATTCGAGATAAGCCTATGGAAACTCAATTATAGATTATTCAGATGGAAGTGTCATATATTATAACTTGTTTCTTTCTTTGCATAGCTTCTGAACTTGATGGTTTCTGGAAGG

Fln Alignment:

Contig6022___MGEEKEKTKSKCSRCEKERCCLHHLKVEGLYQLLCSSCVLVTHCHMYCPYCLDDCGSSSEGLLKCSACPRSVHVNCQHMAAATLPMAVPMSEPFLCPHCQNPNSDVMPFALLNSHRQGPPNKKLKGAHGRPVNSQSDFVSAKVVLTAARIASTSMHSVAATASAEAQXXXXXXXXXXXXXXXXIHRALNVATEEESKAHATNPSTATPTSFTSNADKMNSEIVSQNLATGSLTSMPMTKATIAGEPNGPAR
C0PT71______________MGEEKEKAKSKCSRCEKERWCLHNLKVEGLYQLLCSSCVLVTHSHMYCPYCLDDCGSSVEGLLKCSTCPRSVHVDCQRRAAATLALAVPMAEPFLCPHCQNPKSDVMPFALLNSHSQSPPNKKLKGAHGRPVSSQPDFVSAKVILTAARIASASMHSVAATASAEAQKRAMEAARLRKEAKEAIHRALTVAMEEESKAHSINPSASTPIAFTANADKMNSEIVSQNLATSSLTSMPMTKATIAGEPNGPAR

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
113	80		20		0.995493
115	80	20			0.995493
116			20	80	0.995493
123		80		20	0.995493
125			20	80	0.995493
126	80	20			0.995493
128		80	20		0.995493
450		16		83	0.994512
524		42	57		1.0
586		88		11	0.923564
764			87	12	0.999964
813	91			8	0.999766
816			91	8	0.999766
818	8		91		0.999766
1097		85		14	0.993533
1219		20		80	0.995493
1228	87		12		0.992554
1237	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain