SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6008

Length: 1720 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6008 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative inositol transporter (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKB0_VITVI	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	probable inositol transporter 2-like	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	myo-inositol transport	GO:0015798	Biological Process	69%
Blast2go	signaling	GO:0023052	Biological Process	69%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	69%
Blast2go	myo-inositol:hydrogen symporter activity	GO:0005366	Molecular Function	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%
Blast2go	pollen tube	GO:0090406	Biological Process	69%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Plexin/semaphorin/integrin	IPR003659	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLI2

Fln msg: your sequence is shorter than subject: 472 - 589

Fln protein: VCMAAAPDPYVLILGRILVGFGVGVASITAPVYIAEVSPSEIRGGLVSVNVLMITGGQFLSYLVNLAFTEVPGTWRWMLGAAGLPAVLQFVLMLFVTEAPLRLFIKNKQVEAVAVLEKIYESDRLKGEIEQLSAAVEEELRQVQSMERIGYFTLFSKKEIRLALLAGVGLQAFQQLTGINTVMYYSPTIVELAGFVSNKIALLLSLMVAGMNAIGSIIGISLIDRCGRRFLLLTSLSGVFVSLGILSGAFYWTSLDVATVDVQQTLKKAGYACPSLLDSSKLIWNCNGCINAGCGFCTAIGNQMLPGSCFVANTTAETYCLQQSRHWYDEGCPSSHGWLAVLGLVLYIAFFSPGMGSVPWAINSEIYPAKYRGRCGGIAATVNWICNLIVAQSFLSLIDALGTPITFMVFAAITFVAFFFVLAFVPETKGLTFEEIENLWEKRAKGQSKTKKTSALTESLLNNRQKSQSIR*

Protein Length: 473

Fln nts: GTCTGTATGGCTGCTGCACCCGACCCATATGTCCTTATTCTTGGTAGGATTTTGGTAGGGTTTGGTGTTGGTGTAGCATCAATCACTGCTCCAGTATATATTGCCGAAGTTTCGCCTTCTGAAATAAGAGGAGGACTTGTGTCCGTGAATGTGCTAATGATAACTGGCGGGCAGTTTCTGTCATATCTTGTGAATTTAGCATTCACTGAGGTACCAGGGACATGGCGTTGGATGCTTGGTGCAGCTGGGTTACCTGCTGTGCTGCAGTTTGTATTGATGTTGTTCGTGACAGAGGCTCCACTCAGGCTATTTATAAAGAACAAGCAAGTTGAAGCTGTTGCAGTTCTTGAAAAGATATACGAATCAGACCGCTTGAAGGGTGAAATTGAACAGCTCTCTGCTGCAGTTGAAGAAGAACTTCGGCAGGTGCAGTCCATGGAAAGAATAGGATACTTTACCTTGTTTAGCAAAAAGGAAATAAGACTTGCTTTACTTGCTGGGGTTGGTCTACAGGCGTTTCAGCAATTAACTGGCATCAATACTGTTATGTATTACAGTCCCACTATTGTCGAGCTGGCTGGTTTTGTTTCAAATAAAATTGCTTTGTTGCTATCTCTGATGGTTGCTGGAATGAATGCCATTGGCTCTATTATTGGCATATCTCTTATAGATCGATGTGGAAGAAGATTTCTACTCCTAACCAGTTTATCTGGTGTCTTTGTATCCCTCGGCATTCTGTCAGGTGCATTTTATTGGACTTCACTTGATGTTGCTACTGTTGATGTACAGCAGACTCTTAAAAAAGCTGGCTATGCCTGTCCATCACTCCTTGATTCCAGCAAGCTTATTTGGAACTGCAATGGCTGCATAAATGCTGGATGTGGCTTTTGCACTGCCATTGGAAACCAGATGCTTCCCGGAAGTTGCTTTGTTGCAAACACTACTGCTGAGACGTATTGTCTCCAACAGTCTCGTCATTGGTATGATGAAGGATGTCCAAGTAGCCATGGATGGCTTGCTGTTCTTGGATTGGTTTTGTATATAGCTTTCTTCTCCCCTGGAATGGGATCTGTTCCTTGGGCAATCAATTCTGAAATCTACCCTGCAAAATACCGAGGTAGATGTGGAGGTATTGCTGCCACGGTAAATTGGATATGTAACTTGATTGTTGCCCAGAGCTTCCTGTCATTGATTGATGCACTGGGCACTCCAATAACATTTATGGTATTTGCTGCTATCACCTTTGTTGCATTCTTTTTTGTACTTGCATTTGTTCCCGAGACAAAGGGCCTTACTTTTGAGGAAATTGAAAATTTATGGGAAAAGAGAGCAAAAGGGCAGAGTAAAACTAAGAAAACCAGTGCTTTAACTGAAAGTCTTCTCAACAACCGTCAAAAGTCACAATCTATTAGATAG___TGGGTGTGAATTTTTCTATAGGGGGTTCAATTTTCGCTGTCCATACACAGTTTGTTATTGTTGTGACCTCGTGATATGGCATGGAACAATTGATAAGAGAAACATGTTTAGACTTGATAAATGTTATTGGAAACTATAGGCCATTCTATCTGAACGATACTTGTATAGGATAGTAACTATGCATACTCAATAAATGTCATTGGAAACTATAGGCCATACTATGTGAACGATATTTGTATAGGATAGTAACTACGAATACAATTGTGCTTCCGGTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

Contig6008___VCMAAAPDPYVLILGRILVGFGVGVASITAPVYIAEVSPSEIRGGLVSVNVLMITGGQFLSYLVNLAFTEVPGTWRWMLGAAGLPAVLQFVLMLFVTEAPLRLFIKNKQVEAVAVLEKIYESDRLKGEIEQLSAAVEEELRQVQSMERIGYFTLFSKKEIRLALLAGVGLQAFQQLTGINTVMYYSPTIVELAGFVSNKIALLLSLMVAGMNAIGSIIGISLIDRCGRRFLLLTSLSGVFVSLGILSGAFYWTSLDVATVDVQQTLKKAGYACPSLLDSSKLIWNCNGCI--NAGCGFCTAIGNQMLPGSCFVANTTAETYCLQ-QSRHWYDEGCPSSHGWLAVLGLVLYIAFFSPGMGSVPWAINSEIYPAKYRGRCGGIAATVNWICNLIVAQSFLSLIDALGTPITXXXXXXXXXXXXXXXXXXVPETKGLTFEEIENLWEKRAK
B8LLI2______________IIMAAAPNASVLISGRVFVGLGVGMASMTAPLYISESSPAKVRGALVSTNGFLITGGQFLSYLINLAFTKAPGTWRWMLGVAGMPALLQFILMLTLPESPRWLYRKKGEAEAVAVLKRIYSPDEVEEEIQSLKESVETEVQELGTTDKVRYWQLWTTKEIRYALFVGVGLQVFQQFVGINTVMYYSPTIVQLAGYASNQTALLLSLITSGLNATGSIASIYLIDKAGRKKLVIFSLCGCIVALGMLAGVFYQTTHHSPLVSMAATQHYSNYTCPDYA-TAPGIWDCTRCLKANPDCGFCAAAGNQLLPGACLIANSTTKDLCNKFDHRPWFTRGCPSRLGFLAIVGLALYIIFFSPGMGTVPWVVNSEIYPLKFRGLCGGIAATACWISNLIVAQTFLTLTVAIGTSDTFLLFGCIAVAGLFFTLVFMPETKGLSFEQVEVMLQERVR

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
515			78	21	1.0
584	81			18	0.999994
588	81		18		0.999994
592	18	81			0.999994
593	9		18	72	0.999994
597		81	18		0.999994
598	72		27		1.0
604		77	22		0.999999
605	22			77	0.999999
611		42		57	1.0
665			80	20	0.995493
669	75	25			0.996473
716	11		88		0.923564
726		87	12		0.992554
727	87			12	0.992554
728			12	87	0.992554
729	12	87			0.992554
731	12			87	0.992554
732			12	87	0.992554
738	12			87	0.992554
739	87		12		0.992554
740		87	12		0.992554
741		87		12	0.992554
742	87	12			0.992554
744		12		87	0.992554
990		75	25		0.996473
994	33		66		0.997452
1236	66		33		1.0
1239		33		66	1.0
1241	16			83	0.994512
1242		16		83	0.994512
1353	25		75		0.996473
1418	33			66	0.997452
1419			66	33	0.997452
1420	66	33			0.997452
1425		50	50		1.0
1428	50	50			1.0
1430	50			50	1.0
1431	50	50			1.0
1432			50	50	1.0
1434			50	50	1.0
1437	50	50			1.0
1442	60		40		1.0
1542	75		25		0.996473
1589		33		66	0.997452
1597		33		66	0.997452
1598		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain