SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5981

Length: 1435 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5981

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	myb family transcription factor-related protein [Populus tomentosa]	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	myb family transcription factor apl-like	-	-	57%

Source	InterPros	Term	Type	Identity
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPV3

Fln msg: Overlapping hits, possible frame ERROR between 531 and 512, STOP codon was not found. Distance to subject end: 4 aas, Unexpected STOP codon in 5 prime region,

Fln protein: MYQQQQANKKNNMSMQVSSGDAALVLTTDPKPRLRWTVELHDRFVDAVNQLGGPDKATPKTIMKVMGVKGLTLYHLKSHLxxxxxxxxQPHKELNDHKDGERGSRLSEGHGASTSSSRMMGQEMNEGFHISEALRMQMEVQRRLHEHLEVQRHLQIRIEAQGKYMQSILENACQTLACQTGPSAGTETRRQELPDLASKVSNDFFRTPPRGTVNYPSLTEMNTFRGEHNHIRQQTHLTDCSVDSCLTSNETFGKMIEENVQGVSKKRPMSFYCDNDTSIWEKDGKGDDVRVHELSNELSNACLGQKETFKGEQRPSSSSVKIESERNSASDVFETRGSQLQEPASSSKTDKDLRNSPKLERPAPKKTPIVADRMSPQTKDGAFSPTTNF

Protein Length: 390

Fln nts: CTGGATCATCCAGTCGGCTTCTTTAACCCTTTGGGTGGACCCTGGTGTTATTACTTTTTCGCTGAAAAGAATAATTCGAAGCCAAGATCGAATAGATGAAATTGCAGTCGGCGTGTGGCGGGGAATCAATCAAAGCAAAGCGAACGCATTTCGGGGAATGGTTTTACTGCACGGGATTCGATCGCGGGACAAGACATAGAAGAAACAGGCGGTCTCCGGGCGCTGGAAATGGAAAAGATTTGAGCGATTCGGAGGTAAGGGGATTCGAAC_-_ATGTACCAACAGCAGCAAGCGAACAAGAAAAACAACATGAGCATGCAGGTTTCTTCCGGAGATGCTGCCCTGGTTCTAACCACTGACCCCAAGCCCAGGCTCCGATGGACTGTCGAGCTGCATGACCGCTTTGTCGATGCTGTCAATCAGCTTGGTGGCCCCGACAAGGCGACGCCGAAGACGATTATGAAAGTAATGGGTGTCAAGGGGCTTACTCTCTACCACCTCAAGAGTCATCTTxxxxxxxxxxxxxxxxxxxxxxxxCAACCTCACAAGGAGTTGAACGACCACAAGGATGGGGAAAGAGGGTCTCGGCTTAGTGAGGGGCATGGGGCAAGCACTTCATCCTCGAGAATGATGGGCCAGGAAATGAATGAGGGTTTCCACATATCTGAGGCGCTAAGAATGCAAATGGAAGTTCAGAGAAGACTGCATGAGCATCTCGAGGTTCAGAGGCATCTGCAGATCCGAATAGAAGCACAAGGTAAATACATGCAATCTATACTAGAAAATGCCTGCCAGACCCTTGCATGCCAAACTGGACCCTCTGCAGGCACGGAAACCAGACGGCAAGAGCTTCCAGACTTGGCATCTAAGGTGTCAAATGATTTCTTTAGGACTCCCCCTCGGGGTACTGTCAATTACCCTTCTTTGACAGAAATGAATACTTTTCGTGGGGAGCACAATCATATTAGGCAGCAGACTCATTTAACAGACTGCTCTGTGGATAGCTGCTTGACATCAAATGAGACTTTTGGGAAGATGATTGAAGAGAATGTGCAAGGTGTGAGTAAGAAAAGGCCAATGTCCTTCTATTGTGATAATGATACATCAATATGGGAAAAAGATGGCAAAGGGGACGATGTGCGAGTGCATGAACTTAGCAACGAACTTAGTAACGCTTGCTTGGGACAGAAAGAAACTTTCAAGGGGGAGCAGAGGCCATCTTCTTCTTCGGTAAAAATTGAGTCTGAGAGGAACTCTGCTAGTGATGTATTTGAAACAAGAGGTAGTCAATTACAAGAACCTGCAAGCAGCAGCAAAACAGATAAAGATCTTCGGAATTCCCCTAAACTTGAAAGGCCTGCTCCTAAGAAAACCCCAATTGTTGCAGATAGAATGTCCCCACAGACAAAAGATGGTGCCTTCTCTCCAACTACAAATTTC

Fln Alignment:

Contig5981___GDAALVLTTDPKPRLRWTVELHDRFVDAVNQLGGPDKATPKTIMKVMGVKGLTLYHLKSHLxxxxxxxQPHKELNDHKDGERGSRLSEGHGAST-SSSRMMGQEMNEGFHISEALRMQMEVQRRLHEHLEVQRHLQIRIEAQGKYMQSILENACQTLACQTGPSAGTETRRQELPDLASKVSNDFFRTPPRGTVNYPSLTEMNTFRGEHNHIRQQTHLTDCSVDSCLTSNETFGKMIEENVQGVSKKRPMSFYCDNDTSIWEKDGKGDDVRVHELSNELSNACLGQKETF-KGEQRPSSSSVKIESERNSASDVFETRGSQLQEPASSSKTDKDLRNSPKLERPAPKK-TPIVADRMSPQTKDGAF
C0PPV3______________GDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRAMGVKGLTLYHLKSHLxxxxxxxQPFKEFSDQSNKD-ASCLTEGQGASTCSSSKMINQDVNESFQITEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACQALTDQTIASAGLEAARQELSELAMKVSNGCLSSPFE-DVNLPSLPEIPQIHVDESTLHQQTQLTDCSVDSCLTSNESTPKIPQEDMQAVRNKRSRPLYCDNDALVWDNDVR-NDLRL----QELSAACLSQVGNLNEEEQMPSVSPIESHSERNSMKDEFDTRMTKTKD-GIGNPAERELQSSPKLERPAARRATHLVHDRISSQVKGGPF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
503	33		66		0.997452
549		25		25	0.995533
673	66		33		0.997452
861	40		60		1.0
1280			88	11	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain