SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5962

Length: 1836 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5962 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Selaginella moellendorffii RepID=D8SWI5_SELML	-	-	41%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase; Selaginella moellendorffii (Spikemoss).	-	-	43%
Blast2go	ubiquitin specific peptidase 9	-	-	46%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	46%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8SWI5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 474 - 2442

Fln protein: ICTQDASLG*GLFPVLLKLVEANIDLIDSSYINQQVERPSGTRAGVILTDVVKDEFAKLNIFLVTEFLFRVYLHTHQNLRDDLPHWKVLLCRMFEHSPVACQSFIYALVKQPNWIFDYLLKCPIDEIQQVFSTLLVQALQYAVKFCHHPSSSDSSAPTMDDFCVDDLIGVFLALLKDGTTPKYYLHKYFKVILEYARFGPEQREHLLQKNIFSHLIGFATKLNLQDVKQDLSCLHSIVSLLLRSCDTSGLNNDAEQRMVLPNPNQLQEEPFPLPRDGEEAVFKHRLYTNILIETCPDQDEVITLLEFCSWQNQSFSLCLLQDIMELVQRAVNNELNNLLILLTRLLLLNDSLQMTRQEIALLGFENFPLGIMDLLVSRDQMSSYKRYTLLKFVVKLVARSPDTRLLLLGKQVEWSIVVDWLQDQLDTDISSVTLQGSRVSNGDISRNRLQRTSTSERTLHQARNLFNSSEGDH*

Protein Length: 475

Fln nts: AATTTGTACACAAGATGCATCTCTTGGATAAGGACTATTTCCGGTCCTTTTGAAATTGGTTGAAGCAAACATTGATTTGATAGATTCAAGTTATATCAATCAGCAAGTGGAGAGACCAAGTGGCACAAGGGCAGGAGTTATATTGACTGATGTCGTTAAAGATGAGTTTGCGAAGTTGAATATATTTTTGGTAACTGAATTTTTATTCAGGGTGTACCTGCACACACATCAGAATCTCCGAGATGATTTGCCTCATTGGAAGGTTCTCTTGTGTAGGATGTTTGAACACAGTCCTGTTGCTTGTCAGAGTTTTATTTATGCATTGGTGAAACAACCAAATTGGATATTTGATTACCTTTTAAAATGCCCCATTGATGAAATTCAACAGGTGTTTTCCACTCTCCTTGTACAGGCTTTGCAGTATGCTGTGAAATTTTGCCATCATCCGTCGTCTTCAGATTCTAGTGCCCCTACAATGGATGATTTCTGTGTAGACGATCTGATTGGTGTTTTTCTTGCACTTCTAAAAGATGGAACAACACCAAAATATTATCTTCATAAGTATTTCAAGGTTATTTTGGAATATGCTCGATTTGGGCCAGAGCAGCGTGAACATTTGTTGCAAAAAAATATATTTAGCCATCTGATTGGATTTGCCACAAAGCTTAACCTCCAAGATGTCAAGCAGGATCTCTCATGCTTGCACTCCATTGTATCTTTGCTTTTGCGTAGTTGTGATACATCTGGGTTGAACAATGATGCTGAGCAGAGGATGGTTCTTCCAAATCCAAACCAGCTACAAGAAGAACCATTTCCCTTACCAAGGGATGGGGAAGAGGCAGTCTTTAAGCATCGTTTGTATACTAATATCTTGATTGAGACTTGCCCAGATCAAGATGAAGTCATCACGCTACTGGAATTTTGTAGCTGGCAGAATCAGTCATTCAGTTTGTGTTTGCTGCAGGATATAATGGAGCTTGTGCAAAGGGCTGTAAATAATGAATTAAATAATCTTCTGATTTTGCTGACGCGATTACTGCTTTTGAATGATTCCCTGCAGATGACAAGGCAGGAGATAGCTCTTCTTGGCTTCGAGAATTTTCCTCTAGGAATTATGGATTTACTTGTTTCCCGGGACCAAATGAGTTCATATAAGCGTTACACTTTGCTCAAGTTTGTTGTGAAGCTGGTTGCCCGATCCCCAGATACTCGTTTGCTACTTCTAGGGAAGCAGGTTGAATGGTCAATAGTTGTTGATTGGCTTCAAGATCAGCTGGATACAGATATATCTTCTGTCACTTTACAGGGTTCTAGGGTATCAAATGGAGATATCTCTCGAAACCGTTTGCAGAGGACTAGTACATCAGAACGAACTCTTCACCAAGCTCGCAATTTGTTCAACTCTTCAGAAGGAGATCACTAA___TATTCTTTCCAAAAGCGGCTTGCAATCATTTTTGAATGAGATCACTAATAATTCTTTCCTTATTTGGCTCCTTGTATTATGATGGTTCACAATTTTGGAGTTTTTGATTTTTTGATAGGAATAGTTATGGTGGGTCTGGTAAAAGAGCTTTTCCCGGCCCAACTCAGTTCTTTCAGTGTACCATATGGGAAACTTGTATATCGCTAATGTAGCCTTCTGTATATAATCAATGTAAAGTGTAGAATAGGCAAGGAATTTTCAGTAGTTGTAATTTGGTATAAGCTAAGATGGTTTGTGACCTGATTTTTCAGTTCAAATGTATTCACCTGGGTACTGTACCCAGATTTTTTTGGAATGCTTCATTTATATCGATTGAAATCAACACATATGACCAAAGGTGTATTATAATATAT

Fln Alignment:

Contig5962___FPVLLKLVEANIDLIDSS---YIN------QQVERPSGTRAGVILTDVVKDEFAKLNIFLVTEFLFRVYLHTHQNLRDDLPHWKVLLCRMFEHSPVACQSFIYALVKQPNWIFDYLLKCPIDEIQQVFSTLLVQALQYAVK-FCHHPSSSDSSAPTMDDFCVDDLIGVFLALLKDGTTPKYYLHKYFKVILEYARFGPEQREHLLQKNIFSHLIGFATKLNLQDVKQDLSCLHSIVSLLLRSCDTSGL--------NNDAEQRMVLPNPNQLQEEPFPLPRDGEEAVFKHRLYTNILIETCPDQDEVITLLEFCSWQNQSFSLCLLQDIMELVQRAV-XXXXXXXXXXXXXXXXXXXXLQMTRQEIALLGFENFPLGIMDLLVSRDQMSSYKRYTLLKFVVKLVARSPDTRLLLLGKQVEWSIVVDWLQDQLDTDISSVTLQGS--RVSNGDISRNRLQRTSTSERTLHQARNLFN
D8SWI5______________FKFLYSLVEANSDVIEGRTPRYVGGPDDSRDRKGETSGRKADLAAKDLNASDFAEHSIRIALEFLFRVYLRTHGSLREDFHQWKVTIWKLLDHNIIACRCFLNTLVERPQWVQDFLLRCPVEEVRQAFAALLVHALKTAVNIYQGNVFYVDNCGRQQDALHVDAMVDTLVILLREAASPKSYLQQYFQVLLDYVKLGPYPRLHLLRKAVVGHLVTFATK--FQIAKQDAVYLHTAVSLLVRSCDASKLYDEPEVDKKSDTETKPCQSNPQQFCSLCL-IPKDAAEGVFRHRMYTSILIKTCPEQEEVIRLVEFCSWRNETFSVAVLQDVMEALHHAVNSEALKPILSLAYRLLQLGDSLQATRQEVLLLGYESFPNGVLDLLVSK-AVAVHKRYCLIKFIVKLVDLFPASRVHVLSRKQDWRRAVDWLQQEL----HGIGLSGSIAPVSNEDLSNGYLMRTSTAEWTLTSARKLLS

SNPs (tot: 5)

Position	A %	C %	G %	Probability
1435	87	12		0.992554
1436		12	87	0.992554
1654	80		20	0.999996
1661	83	16		0.994512
1662	16	83		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain