SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5958

Length: 1168 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5958 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chaperone binding / ATPase activator [Arabidopsis thaliana] gb\|AAL58914.1\|AF462824_1 AT5g58110/k21l19_90 [Arabidopsis thaliana] dbj\|BAB11003.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM19978.1\| AT5g58110/k21l19_90 [Arabidopsis thaliana] gb\|AED	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	chaperone binding atpase activator	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of ATPase activity	GO:0032781	Biological Process	74%
Blast2go	ATPase activator activity	GO:0001671	Molecular Function	74%
Blast2go	chaperone binding	GO:0051087	Molecular Function	74%
Blast2go	cytoplasm	GO:0005737	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Activator of Hsp90 ATPase, N-terminal	IPR015310	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABN1

Fln msg:

Fln protein: MAGEVAEETQKTSYRYWVRETTTEAAPLTVPRKLSNEDLAKEQPQSAPLGSVWNRAGTWEERNLSTWASSRIKELLVDLGSLEFDSGKANILEVSSCVGEASVVTVRNKKRIGYSYEIALKFQGEWLIEEEMKQIQGTINVPEASYGDLEDMQLNVSLDADQGIQDSKRSTIIKDLTSFLSPIQNRLLQFEAELKER*

Protein Length: 199

Fln nts: CGTCGTGACCTTGGCTGTCACTGGGAGGTGTATATATGGTATATGTTTGAGTCAAGGTAGTTTCGTTGCTCTGGAAACCACTGGGATAGGTACTGCAACCATTCGAAATTTAGCGGGGCTGCAGGGGGTCAAGGGGCTGCGATTGGGATTAAAAGAATTTTGGGGGTGGGGTAGCGGCGCTTCTGTGCTAAAA_-_ATGGCAGGGGAAGTGGCGGAGGAGACGCAGAAAACGTCGTACAGGTATTGGGTGAGGGAGACCACAACTGAAGCGGCGCCGCTTACCGTTCCGCGGAAACTCTCCAACGAGGATTTGGCAAAGGAACAGCCGCAGTCTGCGCCCTTGGGATCAGTTTGGAATCGGGCAGGAACTTGGGAGGAAAGGAATTTAAGCACCTGGGCCAGCAGTAGGATAAAGGAACTGCTCGTTGATTTAGGTTCCTTAGAATTTGACAGTGGCAAAGCTAATATTTTGGAGGTCTCAAGCTGTGTAGGTGAAGCATCAGTGGTGACAGTGCGCAACAAGAAACGAATTGGTTACTCTTATGAGATCGCCTTGAAGTTTCAAGGTGAGTGGTTAATTGAGGAGGAAATGAAGCAAATTCAGGGCACTATAAATGTTCCAGAGGCTTCTTATGGTGATTTGGAAGATATGCAGTTGAACGTGTCTTTGGACGCTGACCAGGGAATCCAGGACTCCAAAAGAAGTACGATTATTAAAGATCTTACGTCATTCTTGTCTCCAATTCAGAATAGATTGCTGCAGTTTGAAGCAGAGCTGAAAGAAAGATGA___ATTTATGGTTCTGTTTAGAGTTGTTCAAGTTATTGGCGCTAGGCTAACCCTGCTGTGGTTTTGTAACGTTGTTTCTTTCTGTCTGGAGATTTCTACTATCTATTAAGTTTTTATTTAGGAATATTTAGAGTTGTTCACAATTGTTGAACTAATAACTATTTTGGCATATTGTAACATTGACTGAGATTGGACTGTAGAACACGTACAAATTTCAATTTGCTTCTCAGAGTGTCCTCGCAGCTCATTCAAACTGTGCTCAAACTTTTGTTGGTTATAATAACTTGCATGCAAAATTCGTTCCTGTGGGGTTCCTCATTGGGGCTTGAATGGCTTGAATTTGTACATCTTAGCTGGTAGTTGTCCCACAATAAAGGTTAAAAG

Fln Alignment:

Contig5958___MAGEVAEETQKTSYRYWVRETTTEAAPLTVPRKLSNEDLAKEQPQSAPLGSVWNRAGTWEERNLSTWASSRIKELLVDLGSLEFDSGKANILEVSSCVGEASVVTVRNKKRIGYSYEIALKFQGEWLIEEEMKQIQGTINVPEASYGDLEDMQLNVSLDADQGIQDSKRSTIIKDLTSFLSPIQNRLLQFEAELKER
D5ABN1______________MAGEVAEERQNSSYRYWVRETTTEAAPRTVPQKLSAEDLAKQQPQSAPLGSVWNRAGTWEEKNLSTWASSRIKELLIDLGS-EFNSGKANILEVSSCVGEASVVTVRNKKRIGYSYEIALKFQGEWLIEEEMKQIQGTLNVPEASYGDLEDMQLNVTLNTDKGIPDSKRSTIIKDLMSFLSPIQDRLLQFEAELKER

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1119		18		81	0.999994
1120		88	11		0.923564
1122	88		11		0.923564
1123	88			11	0.923564
1124		77	11	11	0.968132
1126		22		77	0.999999
1128			11	88	0.923564
1135			14	85	0.993533
1136	85		14		0.993533
1142		85	14		0.993533
1144		33	33	33	1.0
1146		33	33	33	1.0
1147	33	33		33	1.0
1148	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain