SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5940

Length: 851 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5940

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-tubulin cofactor d, putative n=1 Tax=Ricinus communis RepID=B9RD93_RICCO	-	-	46%
FL-Next	tr=Beta-tubulin cofactor d, putative; Ricinus communis (Castor bean).	-	-	46%
Blast2go	tubulin-specific chaperone d-like	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	62%
Blast2go	cytokinesis	GO:0000910	Biological Process	62%
Blast2go	microtubule-based process	GO:0007017	Biological Process	62%
Blast2go	binding	GO:0005488	Molecular Function	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	HEAT	IPR000357	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RD93

Fln msg: Distance to subject end: 109 aas, your sequence is shorter than subject: 283 - 1260

Fln protein: LEDYRLTTEVMWVSWVREAAMEALEKCTYIICRSLTVFTGNGIKMRHAYTLDEGFMSDTQKENSLFDSNLAARLIGGIAKQAVEKIDKVRDIAGRTLQRILHNDYIFVPYIPHRCELEVIVPKDGTFNWAAPSNCFPCLVRLLQFNEYRTSVLSGLVISIGGLADSLRKASLSALLEYIQISSDGEPKIDKEKAKWLSIDFLEIFRCYPKIDRITIPTLKTIEILFTKGIFLYLEECEQSFGLGILESLRIELKGSKDVTKLLTGIDVLAYVSSMQEPTRSQA

Protein Length: 284

Fln nts: TCTTGAAGACTATCGGTTGACAACAGAGGTGATGTGGGTCTCTTGGGTACGGGAAGCTGCAATGGAGGCCCTTGAAAAATGTACCTACATTATTTGCCGAAGTCTCACTGTATTTACCGGCAATGGAATAAAGATGAGACATGCATATACTTTAGATGAGGGCTTTATGAGTGATACGCAAAAAGAAAACTCTCTATTTGATTCAAATCTAGCTGCACGATTGATAGGTGGCATTGCAAAACAAGCAGTAGAAAAAATTGACAAGGTGAGAGACATAGCTGGAAGAACGCTTCAACGCATCCTTCACAATGATTATATATTTGTTCCTTACATACCTCACAGATGCGAATTAGAAGTGATCGTGCCAAAGGATGGAACCTTTAACTGGGCTGCTCCTTCTAATTGTTTTCCATGTTTGGTGCGTCTACTTCAATTCAATGAATATCGTACGTCTGTACTCTCTGGACTGGTTATATCTATTGGAGGCCTTGCAGATTCTTTGCGGAAAGCATCCTTGAGTGCTCTGTTAGAGTACATTCAAATTTCAAGTGATGGAGAGCCTAAGATTGACAAGGAGAAGGCAAAATGGCTTAGCATTGACTTTCTTGAAATATTTCGTTGCTATCCAAAAATTGATAGAATAACTATACCTACGCTAAAGACAATTGAAATTCTTTTCACTAAAGGCATCTTCTTGTACTTGGAGGAGTGTGAACAAAGCTTTGGTCTGGGAATTCTAGAGTCTCTTAGAATTGAGCTAAAAGGGTCAAAAGATGTTACAAAGCTCTTGACAGGAATTGATGTTCTTGCATATGTGTCTTCAATGCAAGAGCCCACCCGCAGCCAAGCAC

Fln Alignment:

Contig5940___LEDYRLTTEVMWVSWVREAAMEALEKCTYIICRSLTVFTGNGIKMRHAYTLDEGFMSDTQKENSLFDSNLAARLIGGIAKQAVEKIDKVRDIAGRTLQRILHNDYIFVPYIPHRCELEVIVPKDGTFNWAAPSNCFPCLVRLLQFNEYRTSVLSGLVISIGGLADSLRKASLSALLEYIQISSDGEPKIDKEKAKWLSIDFLEIFRCYPKIDRITIPTLKTIEILFTKGIFLYLEECEQSFGLGILESLRIELKGSKDVTKLLTGIDVLAYVSSMQEPTRSQA
B9RD93______________LDDYSVDNRGDVGSWVREAAMEGLETCTFILCLMDSARKSN--RVQSLLEMPEG--AENEQRLLFFDANLATQVIEVIVKQAVEKMDKIREAAAKVLQRILYNKTIFVPFIPHREKLEEVVPNEADLQWSVPTISYPRFIQLLQFSCYSRAVLSGLVVSIGGLQDSLRKASISALLDYLQAVETEDPNERRSREYMVSADILWVLQQYKKCDRVIVPTLKTIEILFSKKIFLDMEVHTSIFCAGVLDSLAAELKGSKDFSKLYAGIAILGYIASLSDPVNSRA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
278	80			20	0.995493
357		50	50		1.0
407		50		50	1.0
452	33		66		0.997452
607			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain