SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5923

Length: 1831 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5923

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Magnesium ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9SWG1_RICCO	-	-	42%
FL-Next	tr=Magnesium ion binding protein, putative; Ricinus communis (Castor bean).	-	-	44%
Blast2go	4 -phosphopantetheinyl transferase	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	59%
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphopantethiene-protein transferase	IPR004568	-	0.0	-
Sma3	4'-phosphopantetheinyl transferase	IPR008278	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9SWG1

Fln msg: Separated hits, possible frame ERROR between 605 and 617, query STOP codon too far from subject stop. Distance to subject end: 144 aas, putative chimeric sequence, your sequence is shorter than subject: 174 - 315

Fln protein: MHISCIGRRTFCTDPTMPFSLLNYCAPPTPREVHFWYLVPEEVQGKMLFNAYKDLISPEEHMHVFEMKEKQLQKQALLARVLIxxxxxNPKSLKFRKNTFGKPEVIWPFEKHNGNVWKPPPLCFNLSHTSSLIACGVTTKSSVGIDVEEKGRRMNSNILKFARRYFLYRRLHG*

Protein Length: 175

Fln nts: TTTATGGGACGGACATGGGGCCCGTCAAATTCCAACCCTGGTTGGGACTTGCTGGTCTCAATGATAGGAACGAACTCTGCCTGCGTAAGTGAACATCACTTCAAAGAGAGCGGGCATTAAGGAATTCGGTCGAGGTGGCCTTCTATACAAGCTAAATCCATGGAGTAGCTGCTGAGAAATTGCTTGTGCTCTCTTTGTATTCAATTTGCATGCCCATTACATGATAGACAGACGACCCACCAACTGTTAATATTCTTGACATCACGAATACTACTGAAACTTGAATGTAATCATGGTCCAGATACAATAATATAATCTGAAGACATATATATCTCTATGAAAGGATATATCCA_-_ATGCATATTTCCTGTATTGGGAGGAGAACGTTTTGTACTGACCCAACTATGCCATTCTCATTACTGAATTATTGTGCACCTCCAACTCCCAGGGAGGTTCACTTCTGGTATCTTGTCCCAGAAGAAGTTCAAGGCAAAATGCTCTTTAATGCATATAAGGATTTGATTTCTCCAGAAGAGCACATGCATGTTTTTGAAATGAAGGAGAAGCAGCTTCAGAAACAAGCCCTACTTGCTCGTGTCTTGATACAxxxxxxxxxxxxCAACCCAAAATCACTGAAGTTCAGGAAGAATACATTTGGGAAGCCAGAGGTGATATGGCCTTTTGAGAAGCATAATGGAAATGTGTGGAAACCTCCTCCTTTATGTTTCAATCTTTCTCATACATCTTCACTAATTGCTTGTGGTGTCACGACAAAGTCTTCAGTGGGCATTGATGTGGAGGAAAAGGGACGAAGAATGAACAGTAATATACTAAAATTTGCCAGGCGCTATTTTCTTTACCGGAGATTGCATGGTTAG___AGGGGATCCCTGATCCTGAGAGGCAACTACAGAAATTTGTACAACTCTGGACTCTCAAGGAAGCATATGTCAAAGCTTTGGGAAGAGGGATAAGTGGAGCTCCTCTCAAGGATTTCACTATCCATCTGAAAAATCTTTCAGGCATTCAAGAGGATTCGTGCCAATGTGGAGATGCTGCTTCCCTGGCACAGACAATAACATTGGAGGTTTCCAGAAACAGTGATGCTATTACAAGTAACTGGCAGTTTCTCCTTTTTCAGCCTACAGATTTACACTATGCTTCAGTTTGCATGGAACAAAATGAAAACCACTTAGATGAGGAGGGAAGGGATGGAAATAGCTATTCTGGTATTAAGATGCAAATCTGGAGGACTGTCCCATTAGTAAAGGATGAATCTTTCTCTGGGAAACAGGCAATTCTTGCTTGCAGTAATTCAGTCAAATTCTAATCATATAATTACTGTGAAAGTATGTGGAAATGGTGCCAGTGCTTCAGACAGCCAAGTACATAACATTGTGTTGGGTTGTGATGGCTGAAGTTATCCCATGTTGGGATGACAGGTTGAGGTGCCAATGGGCTATCTTTCGTTCTCTTGATTGTGTTTTATGGGAATATTAGACAGACAGTTCGAGTCTGGAAATGCTCAGCAATTGTACATTTATGCCATTGCCATCATCGATGGATGTTAAGTTTTCTCTTTCTCTATCTTCCATAATCATCTTTGCAAGCAGCAGAATCAGGGAAGTATCCTTGGTCTAAAAAGTTGGCCTATTTTGGAGGAAGAACCAAGTATTTTTAAAATTTGTTGTTGAAGTATATGTCTTTTATACGTCTTTTATTTGTAGAAAAATATTTACAATCAGAAAACCAAAAGATGGAAGGGTATATACAATGACTATCATAACCTTGTTAAAATTTGGGTACCAGAGGACAAGGGGTTCCCTACGGTTTTGATC

Fln Alignment:

Contig5923___RTFCTDPTMPFSLLNYCAPPTPREVHFWYLVPEEVQGKMLFNAYKDLISPEEHMHVFEMKEKQLQKQALLARVLIQxxxxNPKSLKFRKNTFGKPEVIWPFEKHNGNVWKPPPLCFNLSHTSSLIACGVTTKSSVGIDVEEKGRRMNSNILKFARRYFLY
B9SWG1______________RTFCAAPS---SLLP-ARLPSPMETHFWYIIPDEVKSISLLNKYMEILSPVEKQNVLCMPDDQLRKRAILARTLVRxxxxDPRSLKFRKNIHGKPEV----ERQSEDGLFPPPLHFNISHTSSLIACGVTVNSQIGIDVEEKQRKIKNNVLAFARRYFSF

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1054			14	85	0.993533
1055			85	14	0.993533
1057			14	85	0.993533
1059		85	14		0.993533
1063			85	14	0.993533
1065		85	14		0.993533
1068	85			14	0.993533
1070	85			14	0.993533
1073	85	14			0.993533
1075	85	14			0.993533
1231		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain