SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5916

Length: 894 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5916 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative SAC domain protein 9 [Oryza sativa Japonica Group] dbj\|BAD52755.1\| putative SAC domain protein 9 [Oryza sativa Japonica Group] gb\|EEE54544.1\| hypothetical protein OsJ_01717 [Oryza sativa Japonica Group]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	68%
Blast2go	sac domain-containing protein 9	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylinositol metabolic process	GO:0046488	Biological Process	77%
Blast2go	response to high light intensity	GO:0009644	Biological Process	77%
Blast2go	response to cold	GO:0009409	Biological Process	77%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	77%
Blast2go	phosphatidylinositol-mediated signaling	GO:0048015	Biological Process	77%
Blast2go	inositol or phosphatidylinositol phosphatase activity	GO:0004437	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Synaptojanin, N-terminal	IPR002013	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
649	87	12			0.992554
784	66			33	1.0
790	66		33		1.0
792		66		33	1.0
794	66			33	1.0
795	66			33	1.0
796			66	33	1.0
797		33	66		1.0
799		66		33	1.0
800	66	33			1.0
801		66		33	1.0
804	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain