SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5897

Length: 1388 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5897 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LAG1 longevity assurance homolog 3 n=3 Tax=Arabidopsis RepID=LAG13_ARATH	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	lag1 longevity assurance homolog 3	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	lipid biosynthetic process	GO:0008610	Biological Process	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	TRAM/LAG1/CLN8 homology domain	IPR006634	-	-
Sma3	Longevity assurance, LAG1/LAC1	IPR016439	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUX8

Fln msg:

Fln protein: MAMTNELQWPDWEYEEYPSKEDLLIAPLFAILFPILRLLLDRLLFESLGKWLVLGSMNGLHEDELADHRKRHTKFKESAWKCLYYFSAESLALAVTYNEPWFTNTQNFWVGPGDQIWPDQKVKTKLKLQYMYAAGFYTYSIFALIFWETRRSDFGVTMSHHVATVILILASYLLRFSRVGSVVLAIHDASDVLLEISKMFKYSGSTMIPSILFILFAISWIVLRLIYFPFWIIWSTSYEVLLTLDMDKHKIEGPIYYYIFNSLLICLLVLHIYWWVLIYRMIVRQIKAKGKISEDLRSDSEGEDKED*

Protein Length: 309

Fln nts: ATGGGGGAGTTCAAAAGCCGACCTAAACCCGGAGGTACAGAGTTCGAAACGGGTGTCCGGGTTGGGCAGACTTTGCCTTTGGAGACGCTGTATATGCACAGTTACAGTTA_-_ATGGCAATGACAAATGAATTGCAGTGGCCAGATTGGGAATATGAAGAATATCCTTCAAAGGAAGATCTTCTCATCGCACCCTTATTTGCGATTCTTTTCCCCATTCTCAGGTTATTGCTGGACAGGCTTCTTTTCGAGAGTCTAGGAAAGTGGCTTGTCCTGGGCTCTATGAATGGCTTGCATGAAGATGAACTTGCGGATCACAGAAAACGCCATACAAAGTTTAAAGAGTCTGCTTGGAAGTGTTTGTATTACTTTTCAGCAGAATCACTGGCGTTGGCAGTCACTTACAACGAGCCATGGTTCACAAATACACAGAACTTTTGGGTTGGACCGGGTGACCAGATATGGCCAGATCAAAAAGTGAAGACAAAGTTAAAGCTACAGTACATGTATGCAGCAGGGTTTTATACATACAGTATTTTTGCTTTGATTTTTTGGGAGACTAGGCGATCAGATTTTGGAGTGACCATGTCTCATCATGTAGCAACTGTGATTCTCATTTTAGCATCATATTTGCTAAGGTTTTCAAGAGTTGGCTCCGTTGTTCTAGCCATCCATGATGCAAGTGACGTGCTTCTGGAAATCAGCAAGATGTTTAAATACAGCGGCTCTACCATGATACCTAGCATCTTGTTTATCCTTTTTGCGATTTCATGGATTGTGCTCCGTCTTATATACTTTCCCTTCTGGATTATTTGGAGCACAAGTTATGAAGTTCTTCTCACTTTGGATATGGACAAGCACAAGATAGAAGGCCCTATTTACTATTATATCTTCAACTCACTCCTCATATGTTTGCTTGTCCTTCATATTTACTGGTGGGTTTTGATATACCGCATGATTGTCCGACAAATCAAGGCAAAAGGGAAAATTAGTGAAGATCTTAGATCTGATTCTGAAGGTGAGGACAAGGAAGATTGA___AATTGTCTAAACATGCATCATTTTGAGTTGTCAGAAACTAGAATGAGAGTCCTATTCTCCAGATGACGGTTATGATCACTCATTCGTGCACTCAAATGTACAGTGTATGTGTGGAACGTTTGTACTTCTTGGCATGAATCACGTAATTCAAGAATTATATTAAGGAGATTCACTGTAGTTCTCTGCTGCCATTATTGGATGAGTATTGTTGGAGCTCTTATTGGACTGAAACATTATTGTTGGGAAACAACATATTTATTGTCAAAGTCTGTTGCCCTGAAGGTTGGGTGTGCTGCTGCAACAGCTGTATTTAATTATTTATCAGAAGCTTGAAGGCCCTTTATAAAGGTCCTG

Fln Alignment:

Contig5897___LQWPDWEYEEYPSKEDLLIAXXXXXXXXXXXXXXXXXLFESLGKWLVLGSMNGLHEDELADHRKRHTKFKESAWKCLYYFSAESLALAVTYNEPWFTNTQNFWVGPGDQIWPDQKVKTKLKLQYMYAAGFYTYSIFALIFWETRRSDFGVTMSHHVATVILILASYLLRFSRVGSVVLAIHDASDVLLEISKMFKYSGSTMIPSILFILFAISWIVLRLIYFPFWIIWSTSYEVLLTLDMDKHKIEGPIYYYIFNSLLICLLVLHIYWWVLIYRMIVRQIKAKGKISEDLRSDSEG
A9NUX8______________MSWIDWESEAYPSNEDLLMVPVFALFFPSVRFFLDRFIFERLARRFVPGSAKGASQDQQDECNKRHIKFKESAWKCIYYLSAEIIALAVTYNEPWFTNTGNFWVGPGDQVWPDQNVKTKLKALYMYTAGFYTYGIFALIFWETRRSDFGVSMAHHVATVILIILSYLLRFARVGSIVLALHDASDVFLEVGKMFKYNGSNIVPSISFLLFVISWVVLRLIYYPFWILWSTSYEVLHTLDKKKHQKEGPIYYYVFNSLLYCLLFIHIYWWVLMYRVLVKQVKARGKLGEDVRSDSEG

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
706	42		57		1.0
784		88		11	0.923564
817	55		44		1.0
976	10	90			0.90298
980			90	10	0.90298
997	30			70	1.0
1003		60	30	10	1.0
1005		70		30	1.0
1009		30		70	1.0
1012		30		70	1.0
1013			30	70	1.0
1069		12		87	0.992554
1082			90	10	0.90298
1088		10		90	0.90298
1097		44		55	1.0
1286	88		11		0.923564
1295		11		88	0.923564
1297			11	88	0.923564
1298	88	11			0.923564
1301	11		88		0.923564
1302		88	11		0.923564
1307	11	88			0.923564
1309	88		11		0.923564
1311	88	11			0.923564
1322		12	87		0.992554
1327	85			14	0.993533
1349		83	16		0.994512
1350	20	20		60	0.99255
1351		20	80		0.995493
1352		20		80	0.995493
1355	20	60		20	0.99255
1356	33	66			0.997452
1357			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain