SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5887

Length: 1724 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5887

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	49%
Blast2go	like protein domain-containing protein	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TNG4

Fln msg: Overlapping hits, possible frame ERROR between 471 and 468,

Fln protein: MAGSIDCDHQHEYKLDRWGYPINTKSNACILHINSYCEQVLSYGAKRDVITRATQEDGDCVLANTLAALTLVDKRPSDAASHLHAAERKLEVxxxYEQMVFNAVSSLINGGDEETTIDLHFKLLKDFPKDLVSLKRAQVLCFYIGRPDLSLQLVEQVLPANQGENYIYGMLSFSLLEVGRMGDAELASRKGLTIKSDDPWSQHALCHVFQHECRFKEAVQFMKTCLDSWNACCSFMYTHNWWHLALCYLEGHAHLSKVLHIYDSHILASLQRENVNPSQVYLNALGLLLNIHVHGHSGIIDDRMRDLSYHLLDQSLWHQEWLLDLLAVWALTFTNKFSQADQLLEDMKCRVNEMRGKKRQSMQRVLLLAEALYHYGKSDYSRAYNILGPNFNVCEYKVIGASDEQLDVFDNVWCIILLNSGHISEAIEALERKVAIRSGVPLTWRFLEKAYSREGGEPLKIAREKAKALEETYFTEED*

Protein Length: 480

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTTAGATTATTCGTTTGACCGTGGAGTGTCTCTCATTTGTCACGATTGTCTGATCCATTGCTCAGTGGTGCCTCCAAGCAGTCGCTTTGGGAACAGGGTAACAGAAGTTAATATCGAAAATTGTCGGATGCGTTGTCTCTGTTTGTGATTTGGTAGAAGATA_-_ATGGCGGGGAGTATTGATTGTGATCATCAACATGAATACAAATTGGATCGATGGGGTTATCCCATTAACACCAAATCAAATGCGTGCATTCTGCACATCAATTCTTACTGCGAGCAGGTTCTGAGTTATGGAGCAAAAAGGGATGTCATTACGAGAGCAACGCAGGAGGACGGCGACTGCGTGTTAGCCAACACTTTGGCCGCCTTAACTTTAGTTGACAAGAGGCCCTCAGATGCTGCTTCTCATCTCCATGCCGCCGAAAGGAAACTGGAGGTGxxxxxxxxxTACGAGCAGATGGTGTTCAATGCGGTCTCGAGTTTAATTAATGGAGGGGATGAAGAAACTACAATCGATTTGCATTTTAAGCTCCTGAAGGACTTCCCAAAGGATTTGGTGTCACTGAAAAGAGCCCAGGTGCTTTGCTTTTACATTGGCCGACCTGATCTTTCTCTTCAGCTTGTAGAGCAGGTTTTGCCAGCAAATCAAGGTGAAAACTATATATATGGAATGCTTTCATTTTCTTTACTGGAGGTTGGGCGAATGGGGGATGCAGAATTGGCTTCAAGGAAAGGCTTGACAATCAAAAGTGACGACCCATGGTCTCAGCATGCGCTATGTCATGTGTTTCAGCATGAATGTCGCTTTAAGGAGGCAGTCCAATTTATGAAAACGTGTTTGGATTCATGGAATGCTTGCTGTTCATTCATGTATACTCACAATTGGTGGCATCTAGCATTATGTTACTTGGAAGGCCACGCACATTTGAGTAAAGTGCTCCATATATATGACTCCCATATCTTGGCTTCTTTGCAAAGAGAGAATGTTAATCCTTCACAGGTTTACTTGAATGCTCTAGGGTTGCTGTTGAATATTCATGTGCATGGACATTCTGGTATTATTGATGATAGAATGAGAGACCTTTCATATCACCTTCTGGATCAATCATTATGGCACCAAGAATGGCTCCTAGATCTTTTGGCAGTATGGGCACTTACATTTACTAATAAGTTTTCTCAAGCAGATCAGTTGCTTGAGGACATGAAATGCAGGGTTAATGAAATGAGAGGAAAGAAGAGACAAAGTATGCAAAGAGTACTACTGCTTGCAGAAGCCTTGTATCACTATGGAAAGAGTGATTACAGTCGGGCATATAACATCCTTGGACCAAATTTTAATGTGTGCGAATACAAGGTGATTGGAGCATCTGATGAACAACTTGATGTATTCGATAATGTGTGGTGTATCATTTTACTCAACTCGGGTCATATTTCAGAAGCGATAGAGGCATTAGAACGCAAAGTAGCAATAAGGAGTGGAGTCCCCCTAACATGGCGCTTCTTGGAGAAGGCATACTCAAGAGAGGGAGGGGAGCCGTTGAAAATTGCCAGAGAAAAAGCCAAAGCTCTGGAAGAAACATACTTTACAGAAGAGGACTAA___GTTACGATTGTTGTATAACATAATATTATTAGAAAATGCTTTATATTTTTGTACTCAATAAACACTCTGGGCAATATCTCATTGCCATTCTTGCTTCAA

Fln Alignment:

Contig5887___EYKLDRWGYPINTKSNACILHINSYCEQVLSYGAKRDVITRATQEDGDCVXXXXXXXXXXVDKRPSDAASHLHAAERKLEVAxCYEQMVFNAVSSLINGG-DEETTIDLHFKLLKDFPKDLVSLKRAQVLCFYIGRPDLSLQLVEQVLPANQGENYIYGMLSFSLLEVGRMGDAELASRKGLTIKSDDPWSQHALCHVFQHECRFKEAVQFMKTCLDSWNACCSFMYTHNWWHLALCYLEGHAHLSKVLHIYDSHILASLQRENVNPSQVYLNALGLLLNIHVHGHSGIIDDRMRDLSYHLLDQSLWHQEWLLDLLAVWALTFTNKFSQADQLLEDMKCRVNEMRGKKRQSMQRVLLLAEALYHYGKSDYSRAYNILGPNFNVCEYKVIGASDEQLDVFDNVWCIILLNSGHISEAIEALERKVAIRSGVPLTWRFLEKAYSREGGEPLKIAREKAKALEETYF
D7TNG4______________EVKVDKWGYEVNTSSDACISAINAYYHQLLIYGRERSVILEAPLRDQHCVLANILAAHFLCSADPSRAPLHIQAAKSRLQQAxAYEKAVFDAVSCLISQDRDDDLALELHSKLLKDFPRDLVSLKRAQVFCFYMGRPDLSFNLVQQVLHENQNENYIYGMLAFSLLECGQMVDAEKAAKRGFEINKQDCWSQHALCHVLQYECRFKEAVEFMEECSSSWSLCSSFMLTHNWWHVSLCYLEGHSSIRKVLEVYDNYIWKELERPDAASAEVYLNALGLLLRVYVRGHAVVFEDRLKTLVSRLTDQSTWYIEWHLDLLTIWALASTGELVKTEALLQGLKSRLSRMSKKKQQTMQRGILLAEALYEYGRGNHIRALELLGPDFNANHCKMIGASDEQLDVFNELWYSMLLSTGQATKAIEVIEKQVKNREGVPFLWRLLERGYSMTGKQEARVAGEKAMALETSYF

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
628	83			16	0.994512
630		83	16		0.994512
634		16		83	0.994512
638			16	83	0.994512
642			16	83	0.994512
646			83	16	0.994512
648	16			83	0.994512
712	14			85	0.993533
734	20		80		0.995493
781		80		20	0.995493
874	90		10		0.90298
876		10	90		0.90298
878	90			10	0.90298
879	90		10		0.90298
880	10			90	0.90298
881		10	90		0.90298
893		14		85	0.999981
1169			83	16	0.994512
1413		14		85	0.993533
1416	85	14			0.993533
1417			14	85	0.993533
1420	10		90		0.90298
1422		10		90	0.90298
1423	80	20			0.999996
1428		10		90	0.90298
1429		10	90		0.90298
1432	10		90		0.90298
1433		10	90		0.90298
1434		10		90	0.90298
1436	10		90		0.90298
1439		30		70	1.0
1468		30	70		1.0
1490	10		90		0.90298
1493	90			10	0.90298
1494	90			10	0.90298
1531			11	88	0.923564
1534			11	88	0.923564
1537	11		88		0.923564
1538	88	11			0.923564
1539		11	88		0.923564
1540	88			11	0.923564
1541	88			11	0.923564
1545	88		11		0.923564
1573	88		11		0.923564
1683		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain