SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5862

Length: 1340 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5862 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative U2-associated SR140 protein [Oryza sativa Japonica Group]	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	54%
Blast2go	protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	63%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	mRNA splicing factor, Cwf21	IPR013170	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H346

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 58 aas, your sequence is shorter than subject: 446 - 964

Fln protein: C*FPTFFITVVLRRDLGCHSIVQNFEASLPDIMESFNDLYRNITGRITAEALKERVLKVLQAWADWFVFSDVYVNGLRATFLRPGNSGVPPFHTICGDAPPVKDIDNSEDISNSKSEGTRESQDAALAIGKGAAARELSSLPLAELERRCRHTGLSIRGGRDLMVARLLSLEEAEKQKSQDQDDSLRYGPGQSYAGKHGREINSSRSEGRWSTGNGGWKEVNHGAGREYRLESRHNVLEESVLWPQYEDHDTDNTVEGTPRGAVDQSTVTLAPKLMIPQPDLKPFAKKSGRMDPVLPVSKWAREDDGSDAEDKQDPRGLGLSYSSSSEDSLSGKGKGEEQEMAVENSFPAVIDTGMNEEHRQKLRRLEVAVMEYRESLEECGINNAEEIERKVSAHRSKLKAEFGLMDEAADNDKNNSRISESSSPDRKERWDGHRHSSSKKHIHS

Protein Length: 447

Fln nts: TATGCTAGTTTCCGACATTCTTCATAACAGTAGTGCTCCGTCGTGACCTTGGCTGTCACTCAATCGTACAAAATTTTGAAGCCAGCTTACCTGATATTATGGAAAGTTTTAATGACCTATATCGAAATATCACTGGCCGGATTACTGCTGAAGCTTTGAAGGAAAGAGTTTTGAAAGTTCTCCAGGCTTGGGCAGACTGGTTTGTCTTTTCAGATGTTTATGTGAATGGACTGAGAGCTACTTTTCTTCGCCCTGGAAATTCAGGTGTTCCTCCTTTTCATACAATTTGCGGAGATGCACCACCAGTAAAGGACATTGACAATTCAGAGGATATTAGCAACAGCAAGTCAGAAGGAACCAGAGAAAGTCAAGATGCTGCATTGGCTATTGGAAAGGGAGCAGCAGCTAGAGAACTGTCGAGCCTTCCTCTTGCAGAACTTGAGAGGCGTTGTAGACATACAGGGCTTTCCATTCGTGGAGGTAGAGATCTGATGGTTGCACGGTTGCTTAGCTTAGAGGAGGCAGAGAAACAAAAGTCCCAAGATCAAGATGATTCCCTTCGATATGGGCCAGGGCAGAGCTATGCAGGGAAACATGGAAGGGAAATTAACAGTTCTAGATCAGAAGGACGTTGGAGCACTGGTAATGGTGGATGGAAAGAAGTCAACCATGGTGCTGGTAGGGAGTATAGGCTAGAATCAAGGCACAATGTCTTAGAAGAGTCAGTTCTTTGGCCACAATATGAAGACCATGACACAGATAATACGGTGGAAGGCACTCCCAGAGGAGCTGTGGACCAGTCTACTGTTACATTGGCTCCCAAATTGATGATTCCACAGCCAGACTTAAAACCATTTGCTAAAAAGTCTGGGAGAATGGATCCTGTTTTACCTGTTTCCAAATGGGCTCGAGAGGATGATGGAAGTGATGCTGAAGACAAGCAGGATCCTCGAGGTCTTGGTTTGAGTTATTCTTCCTCAAGTGAGGATAGTCTTTCTGGCAAGGGAAAAGGTGAAGAACAAGAAATGGCTGTGGAGAATAGCTTTCCTGCAGTCATCGATACTGGAATGAATGAAGAACACAGGCAAAAGTTACGGAGATTGGAAGTTGCAGTAATGGAGTATCGTGAGTCTCTTGAAGAATGTGGCATAAACAATGCAGAAGAAATTGAAAGGAAAGTATCTGCTCACAGAAGCAAACTGAAAGCTGAATTTGGTTTAATGGATGAAGCAGCTGACAATGACAAAAATAATAGTCGCATCTCAGAGAGCAGCTCCCCTGATCGAAAGGAACGGTGGGACGGGCATAGGCATTCATCTTCAAAGAAGCATATTCACAGC

Fln Alignment:

Contig5862___FEASLPDIMESFNDLYRNITGRITAEALKERVLKVLQAWADWFVFSDVYVNGLRATFLRPGNSGVPPFHTICGDAPPVKDIDNSEDISNSKSEGTRESQDXXXXXXXXXXARELSSLPLAELERRCRHTGLSIRGGRDLMVARLLSLEEAEKQKSQDQDDSLRYGPGQSYAGKHGREINSSRSEGRWSTGNGGWKEVNHGAGREYRLESRHNVLEESVLWPQYEDHDTDNTVEGTPRGAVDQSTVTLAPKLMIPQPDLKPFAKKSGRMDPVLPVSKWAREDDGSDAEDKQDPRXXXXXXXXXXXXXXXXXXXXXEQ-EMAVENSFPAVIDTGM-NEEHRQKLRRLEVAVMEYRESLEECGINNAEEIERKVSAHRSKLKAEFGLMDEAADNDKNNSRISESSSPDRKERWD
F6H346______________FEATLPDIMESFNDLYRSVTGRITAEALKERVMKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIEKKTSSEDTG----EGGKSNQDAALAMGKGAAMKELLSLPIAELERRCRHNGLSLVGGREIMVARLLSLEEAEKQRGYDLDDDLKYAQSHSNSGRYP----SSRKEIGVETESVGLSG-----------------------WNRYGEDEIQSQGKGS---------VPLAPTIPIPQPELKAFTNK-GKTDPVLPASKWAREDDDSDDEQKRSARGLGLSYSSSGSENAGDGPSKADEMEFATESSIPSQPDSGMMNEEHRQKLRRLEVALIEYRESLEERGIKSSEEIERKVAIHRKRLQSEYGLSDSNEDVSWN-----KRSSAERRDRRD

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
1025		85	14		0.993533
1027	85		14		0.993533
1030	14			85	0.993533
1032	14	85			0.993533
1033			14	85	0.993533
1034		14		85	0.993533
1035		14		85	0.993533
1038	14			85	0.993533
1042		14	85		0.993533
1043	14		85		0.993533
1044		14		85	0.993533
1047	85		14		0.993533
1102			90	10	0.90298
1103			10	90	0.90298
1108		90	10		0.90298
1109	10			90	0.90298
1113		10		90	0.90298
1115	10	90			0.90298
1117			10	90	0.90298
1123		10		90	0.90298
1124	90		10		0.90298
1130		77	22		0.999999
1131	22			77	0.999999
1134	77		22		0.999999
1136	77	22			0.999999
1139	77	22			0.999999
1144	77		22		0.999999
1145		77		22	0.999999
1150	22			77	0.999999
1273	66			33	0.997452
1286	33		66		0.997452
1290		33	66		0.997452
1292		66	33		0.997452
1294			66	33	0.997452
1295		66	33		0.997452
1300			66	33	0.997452
1303	66	33			0.997452
1304		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain