SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5861

Length: 2020 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene5861
TGGAGGAACAGCCTCCCCTGACTCTGGACTTCCAGGTTGTCAATGATGTGGGCTTCGTGAACCCCCAGCGCCTGGTCATATGCACCTGTGAGCGCGTCGAAAAGGGCGGCGGAGGCATGGCGGTCTTCAATACTCGAACGGGGAAGCCCCAATTCAAGTTCCAGGTCTCCCATGACAACCAACCGAAGAACTTCACGGCCGGGGCGCTTGCCAGCGGCGACGGTCATGTGTACGCCAGCTGTCGCGGGCGTAGTACAGAGTACGGTGTTGGAGTATGGGACCAAACCTCGGGTCGCCAAGTGGATTTCCTCTACCAGGCGGCCGGAGGATGGCCGCTAGGCGACGCTGGGAAGCTGCAGTGGTTGCCGGAAAACCGCTTGCTGCTCGCTGCCACTCTATACCCACTCTGCGACGATAGTTTCATAGGCCTGCTTGATTTTCGGGACAGAAAAGTTGTCTGGTCCTGGACGGATTCGGAGGTTCCCCGGATTGCAGGGGACGACAAGGTGGTTTTGGATGCAGTTTTCATGGAAGCCTGCGGTACTGTCTGTGTGGTGAATCAGTATGACAATTTGGGGTTTATTGATATGAGGAGCACTAACCGGAGTGTCCGGTGGTCTCACCGGAACCGGCCCGGGAAGACGATTGAGGGCGAGGAGAGATGCTATTCAAAGCTTGCTGCACAAGGTAATCAGCTCTTCTCTTCCAAGAATGACAGTGTGTATGTATTTTGTAGCCCTGATTGGGTTTTGACATCCAGGCTAAGGAAATTGAATGGGGGCTCAATTTCTGATATCGCTGTCGGTGGGGATCGCCTCTTTGTGCTTCACAATGAAGAAGATGTCTTTGATGTTTGGGAAACCCCAGGGCCTTCTGGTATTGTCCACAGTTATTATGATGATGAATAACAAAATGTAGAGGTTTCTGTAAATTTCAATCCTTTGTCCATGGGTTTGTATATGCCTATTTTCTAGTGTTGCCTACCACAAGTCTTATTAGGTTCTTATAAGCTAGAAGGGTTGCTTATCAGCAGATTGGGCTTGGGGTGCAAAATTGAGTTCAACATCCTGTTGGAGGGAGGGTGGGTTTTGGGCTTCGGGTGCAGAATTGAGTTCAACATCTTGTTGGAGAGGGTGAGATTTATTATCAGGTTTGAAATTTGCTGGCAATCAGCTCTATCCAAACAACATTATTGGTCTCCTACCCATTTAGCTTTTTGCTCAGATTGCTTACTGCTGTTGTATATTGTTTGGTGTTGATGAAGTTGAGGATATGCTGTTGTTCATGGGAAGATTCACTACGAGGGCAAGATTGATTGGGTTTGGGGCAGGACTTGAGCCAAATATATGTTGAGTGAAGGGCTTAGTTTGTCTGTAAACTTTGTATCTGATCAGTTGCAACTTGCAAGGCTCTGTGTGCAACATAATTGTACTCGATTCTATGCTTGGATTCCTTAGTGTCATGTGAGTGTGACCATTGAGTCCTTGTTAGTACCAGTATTGTGGTTGTAATCTGCTCAGAGTTGTTAGCAGTGTGATGATTGGGTTTTTGATAGTGGAGATGAAGATGGGAGTATGTTACATTACTTGTTGAGTTTCTCCTAACCCTCTATTTAGGGCTAGCGTTAGGTGGTGAATTTATATGAATGCACGGGATTTTCTGGTACTTCTCATACTTGTTTTGATAGTGTGTAACCTGGTCTGTATCCATCCAAAAAGCTTGGAGTGCCCTCTTCTTGTCTTTCTATCTTTAAGGATTGGTCAATGGTTCTTGCCAGATCTTTCTAATTTCATCTGGTCCATGCCATGTATTTTGCCTAATTGTCCATATTTCTACAAGCATCTTATCTCTTGATACATGATTTTCATATTTCAGAGGTGTAAAACAGTTCCTGTGGTATTTTGAAGCGAATATGATCTCCAACTTCTCTGGGAGAAAATAGGTCATGTAAAGCTAGAAAGATTTGTAACTGAGCTTTTGGCATTTGCCAGACATGAATGAAGAATTAGTAATATTTACC

Ace file of the UniGene sp_v2.0_unigene5861

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	potassium ion transport	GO:0006813	Biological Process	72%
Blast2go	voltage-gated potassium channel activity	GO:0005249	Molecular Function	72%
Blast2go	voltage-gated potassium channel complex	GO:0008076	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Potassium channel, voltage dependent, Kv, tetramerisation	IPR003131	-	-
Sma3	BTB/POZ fold	IPR011333	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P282

Fln msg: your sequence is shorter than subject: 302 - 456

Fln protein: EEQPPLTLDFQVVNDVGFVNPQRLVICTCERVEKGGGGMAVFNTRTGKPQFKFQVSHDNQPKNFTAGALASGDGHVYASCRGRSTEYGVGVWDQTSGRQVDFLYQAAGGWPLGDAGKLQWLPENRLLLAATLYPLCDDSFIGLLDFRDRKVVWSWTDSEVPRIAGDDKVVLDAVFMEACGTVCVVNQYDNLGFIDMRSTNRSVRWSHRNRPGKTIEGEERCYSKLAAQGNQLFSSKNDSVYVFCSPDWVLTSRLRKLNGGSISDIAVGGDRLFVLHNEEDVFDVWETPGPSGIVHSYYDDE*

Protein Length: 303

Fln nts: TGGAGGAACAGCCTCCCCTGACTCTGGACTTCCAGGTTGTCAATGATGTGGGCTTCGTGAACCCCCAGCGCCTGGTCATATGCACCTGTGAGCGCGTCGAAAAGGGCGGCGGAGGCATGGCGGTCTTCAATACTCGAACGGGGAAGCCCCAATTCAAGTTCCAGGTCTCCCATGACAACCAACCGAAGAACTTCACGGCCGGGGCGCTTGCCAGCGGCGACGGTCATGTGTACGCCAGCTGTCGCGGGCGTAGTACAGAGTACGGTGTTGGAGTATGGGACCAAACCTCGGGTCGCCAAGTGGATTTCCTCTACCAGGCGGCCGGAGGATGGCCGCTAGGCGACGCTGGGAAGCTGCAGTGGTTGCCGGAAAACCGCTTGCTGCTCGCTGCCACTCTATACCCACTCTGCGACGATAGTTTCATAGGCCTGCTTGATTTTCGGGACAGAAAAGTTGTCTGGTCCTGGACGGATTCGGAGGTTCCCCGGATTGCAGGGGACGACAAGGTGGTTTTGGATGCAGTTTTCATGGAAGCCTGCGGTACTGTCTGTGTGGTGAATCAGTATGACAATTTGGGGTTTATTGATATGAGGAGCACTAACCGGAGTGTCCGGTGGTCTCACCGGAACCGGCCCGGGAAGACGATTGAGGGCGAGGAGAGATGCTATTCAAAGCTTGCTGCACAAGGTAATCAGCTCTTCTCTTCCAAGAATGACAGTGTGTATGTATTTTGTAGCCCTGATTGGGTTTTGACATCCAGGCTAAGGAAATTGAATGGGGGCTCAATTTCTGATATCGCTGTCGGTGGGGATCGCCTCTTTGTGCTTCACAATGAAGAAGATGTCTTTGATGTTTGGGAAACCCCAGGGCCTTCTGGTATTGTCCACAGTTATTATGATGATGAATAA___CAAAATGTAGAGGTTTCTGTAAATTTCAATCCTTTGTCCATGGGTTTGTATATGCCTATTTTCTAGTGTTGCCTACCACAAGTCTTATTAGGTTCTTATAAGCTAGAAGGGTTGCTTATCAGCAGATTGGGCTTGGGGTGCAAAATTGAGTTCAACATCCTGTTGGAGGGAGGGTGGGTTTTGGGCTTCGGGTGCAGAATTGAGTTCAACATCTTGTTGGAGAGGGTGAGATTTATTATCAGGTTTGAAATTTGCTGGCAATCAGCTCTATCCAAACAACATTATTGGTCTCCTACCCATTTAGCTTTTTGCTCAGATTGCTTACTGCTGTTGTATATTGTTTGGTGTTGATGAAGTTGAGGATATGCTGTTGTTCATGGGAAGATTCACTACGAGGGCAAGATTGATTGGGTTTGGGGCAGGACTTGAGCCAAATATATGTTGAGTGAAGGGCTTAGTTTGTCTGTAAACTTTGTATCTGATCAGTTGCAACTTGCAAGGCTCTGTGTGCAACATAATTGTACTCGATTCTATGCTTGGATTCCTTAGTGTCATGTGAGTGTGACCATTGAGTCCTTGTTAGTACCAGTATTGTGGTTGTAATCTGCTCAGAGTTGTTAGCAGTGTGATGATTGGGTTTTTGATAGTGGAGATGAAGATGGGAGTATGTTACATTACTTGTTGAGTTTCTCCTAACCCTCTATTTAGGGCTAGCGTTAGGTGGTGAATTTATATGAATGCACGGGATTTTCTGGTACTTCTCATACTTGTTTTGATAGTGTGTAACCTGGTCTGTATCCATCCAAAAAGCTTGGAGTGCCCTCTTCTTGTCTTTCTATCTTTAAGGATTGGTCAATGGTTCTTGCCAGATCTTTCTAATTTCATCTGGTCCATGCCATGTATTTTGCCTAATTGTCCATATTTCTACAAGCATCTTATCTCTTGATACATGATTTTCATATTTCAGAGGTGTAAAACAGTTCCTGTGGTATTTTGAAGCGAATATGATCTCCAACTTCTCTGGGAGAAAATAGGTCATGTAAAGCTAGAAAGATTTGTAACTGAGCTTTTGGCATTTGCCAGACATGAATGAAGAATTAGTAATATTTACC

Fln Alignment:

Contig5861___EEQPPLTLDFQVVNDVGFVNPQRLVICTCERVEKGG-GGMAVFNTRTGKPQFKFQVSHDN-QPKNFTAGALASGD-GHVYASCRGRSTEYGVGVWDQTSGRQVDFLYQAAGGWPLGDAGKLQWLPENRLLLAATLYPLCDDSFIGLLDFRDRK-VVWSWTDSEVPRIAGDDKVVLDAVFMEACGTVCVVNQYDNLGFIDMRSTNRSVRWSHRNRP----GKTIEGEERCYSKLAAQGNQLFSSKNDSVYVFCSPDWVLTSRL---RKLNGGSISDIAVGGDRLFVLHNEEDVFDVWETPGPSGIVHSYYDDE
A9P282______________EELHPLNLDYHLVNDVGFLDTQRLAVCTCASVDKPSHGGMASFNIRTGKLQHRFQVCNQGGQHKNFTAGALASSSHGHVYASCRGLSAEYGVGVWDQATGEQVDFVYN----WPLGDAGKLQWLPESNLLLAATLYPRSDHAHISLMDFREKSGAVLSWTDCHLL----DEKVVVDTVAMEDCRTVCVVNQYDNLGFLDMRSMNH-VKWCHRNRPPEMVSQSLEEEEKWYSKLAACGTQLFSTKNKSVHVFCAPHWVLTSQVENRRGSCGGAISDIAVGGNRLFVLFNEEDVFDVWETPASVNNTCVYEYDE

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
379			28	71	1.0
382	28	71			1.0
383		28		71	1.0
384		28	71		1.0
385		71		28	1.0
387		71	28		1.0
392		71		28	1.0
492		14		85	0.993533
494		85		14	0.993533
495	85	14			0.993533
497			85	14	0.993533
499	14		85		0.993533
500	85	14			0.993533
502			85	14	0.993533
503	85			14	0.993533
504		85	14		0.993533
505	85		14		0.993533
506	85	14			0.993533
507			85	14	0.993533
510	14		85		0.993533
511		14	85		0.993533
513		14		85	0.993533
514	14			85	0.993533
870			66	33	0.997452
923		33		66	1.0
1089			75	25	0.996473
2002	50		50		1.0
2030	20			80	0.995493
2033	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain