SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5844

Length: 994 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5844 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	isoamylase-type starch-debranching enzyme 3 [Phaseolus vulgaris]	-	-	1.0e-35	42%
FL-Next	sp=Isoamylase 3, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	isoamylase chloroplastic-like	-	-	1.85268e-40	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-amylase.	EC:3.2.1.1	-	1.85268e-40	69%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		1.85268e-40	69%
Blast2go	Metabolic pathways	01100		1.85268e-40	69%
Blast2go	Isoamylase.	EC:3.2.1.68	-	1.85268e-40	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	starch catabolic process	GO:0005983	Biological Process	1.85268e-40	69%
Blast2go	alpha-amylase activity	GO:0004556	Molecular Function	1.85268e-40	69%
Blast2go	isoamylase activity	GO:0019156	Molecular Function	1.85268e-40	69%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	1.85268e-40	69%
Blast2go	chloroplast starch grain	GO:0009569	Cellular Component	1.85268e-40	69%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Alpha-amylase, C-terminal all beta	IPR006048	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
74	33		66		0.997452
76			66	33	0.997452
78		66		33	0.997452
81	33		66		0.997452
338	25			75	0.996473
342	75			25	0.996473
577	60			20	0.99255
582			40	60	1.0
604	75			25	0.996473
630		33	66		0.997452
649	60		40		1.0
701		75	25		0.996473
705		75		25	0.996473
718	25	75			0.996473
793	20		80		0.995493
802	20		80		0.995493
820		80		20	0.995493
851		80		20	0.995493
869	75			25	0.996473
870	75		25		0.996473
872		75	25		0.996473
873			75	25	0.996473
874		75	25		0.996473
875	25			75	0.996473
878	75		25		0.996473
882	25			75	0.996473
883		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain