SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5833

Length: 1291 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5833

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative esterase [Oryza sativa Japonica Group] gb\|EAY73022.1\| hypothetical protein OsI_00894 [Oryza sativa Indica Group]	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	gdsl esterase lipase	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	59%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWB0

Fln msg: atg_distance in limit (1-15): atg_distance = 13, Unexpected STOP codon in 5 prime region,

Fln protein: PWLSLDFSFSLAFIVIIYWHSWRRSYAASVCHSAIYSFGDSLADTGNWLASNPAAAGNIARSPYGETYFNRATGRFSDGRLVVDYIAQASGLPFVAPYLSNTSKFEVAGSTVNTSGVNFAVAGATTLELTHFFVAKSISPPMTSFSLDTQIQWFLEYRTNVCSKSPDCEKHFANALFMVGEIGGNDYNDPFMQGRPMDEVETFVPLVVNKTVKAMQALITAGGARKILAQNNLPIGCSALYLRKYATGPGKEPLDAMGCMPRFNAFSRRGNDLLQGRVKKLQVQYPDVKFVFADNYNAVLKILQSPHLSALGAKILDACCGAGGPYNYNPQVPCGAQSAVPCANPGQYFNWDGVHLTDAAYGEIANLFLDGTFTTPALHTLCRA*

Protein Length: 386

Fln nts: CGTCGTGACCTTGGCTGTCACTCGATTTCTCGTTCTCATTAGCATTTATTGTGATTATCTACTGGCATTCATGGAGGCGCAGTTATGCTGCGTCAGTTTGTCACAGCGCTATTTACAGTTTTGGAGATTCTTTGGCTGACACGGGGAACTGGTTAGCCTCAAATCCCGCTGCCGCTGGAAACATCGCTAGATCGCCTTATGGGGAGACTTATTTTAATAGAGCAACAGGCCGGTTTTCGGACGGTCGATTAGTTGTGGATTATATCGCTCAAGCTTCAGGTCTGCCTTTCGTGGCTCCATATCTGAGTAACACTAGTAAGTTTGAAGTGGCTGGAAGCACAGTTAACACTAGCGGTGTTAACTTCGCAGTGGCTGGAGCCACGACCTTGGAACTCACTCATTTCTTCGTAGCAAAGTCAATCTCGCCGCCTATGACTTCATTTTCGCTGGACACGCAGATCCAGTGGTTTTTGGAGTACAGGACAAATGTTTGTTCCAAATCTCCAGACTGTGAGAAGCATTTTGCAAATGCATTGTTTATGGTGGGAGAGATCGGCGGAAACGACTACAATGATCCATTTATGCAGGGACGGCCGATGGACGAAGTGGAAACCTTTGTCCCTTTGGTCGTCAATAAGACCGTAAAAGCAATGCAGGCTTTGATCACAGCAGGTGGGGCAAGGAAGATTTTAGCTCAGAACAACTTACCGATTGGCTGTTCTGCGTTATATTTAAGAAAATATGCTACTGGACCTGGAAAAGAACCGCTGGATGCAATGGGATGCATGCCAAGGTTTAATGCTTTCTCTAGGAGGGGCAATGATCTTCTTCAAGGCCGAGTGAAAAAATTGCAAGTTCAATATCCGGATGTTAAATTTGTGTTTGCAGACAATTACAATGCTGTTCTCAAAATTTTACAGTCTCCACATCTATCTGCATTGGGGGCAAAGATTTTAGACGCATGCTGTGGAGCAGGTGGGCCGTATAACTACAATCCTCAAGTCCCTTGTGGCGCACAGTCAGCAGTTCCCTGTGCAAATCCCGGACAATATTTCAACTGGGATGGAGTTCATTTGACAGATGCCGCTTATGGAGAAATAGCCAATTTATTTTTGGACGGCACCTTCACAACGCCTGCTCTTCACACTCTATGCAGGGCTTGA___TACATTGTCAGAATATGTAATAAAAGGGAGAAACTATCGCCAAATCGAATGCGGACATTTTACTTACGGTGAGGTATCCGCCATTCGATTGTAAGATTAAGGAGAGTGAAAAAAATGATCATAAAATT

Fln Alignment:

Contig5833___CHSAIYSFGDSLADTGNWLASNPAAAGNIARSPYGETYFNRATGRFSDGRLVVDYIAQASGLPFVAPYLSNTSKFEVAGSTVNTSGVNFAVAGATTLELTHFFVAKSISPPMTSFSLDTQIQWFLEYRTNVCSKSPDCEKHFANALFMVGEIGGNDYNDPFMQGRPMDEVETFVPLVVNKTVKAMQALITAGGARKILAQNNLPIGCSALYLRKYATGPGKEPLDAMGCMPRFNAFSRRGNDLLQGRVKKLQVQYPDVKFVFADNYNAVLKILQSPHLSALGAKILDACCGAGGPYNYNPQVPCGAQSAVPCANPGQYFNWDGVHLTDAAYGEIANLFLDGTFTTPAL
A9NWB0______________CYSAIYSFGDSLADTGNLLISGAQQFGPISELPYGQTYFNKPTGRCSNGRLIVDFIAQAYGFQFLPPFLDKHADF--------SNGANFAVAGATAMDAS-FFEERHIEPIFTNFSLDTQIEWFKTFKENYCYGTPDCADHFENALFLIGEIGGNDYNYPFAQGRSLEEVSTFVPLIVQKIKGAIEELIDE-GAKKFFVQGNLPIGCSPFYLTTQQTNSSAD-LDHMGCLVKFNNFSQYSNLHIRNMLLDVQGKHQNISIIYADYFSAALKVLSNPKQYGLQRNVLRVCCGRGGKYNFSPPTSC-SPNVSSCLNPEQYFNWDGVHLTETAYRTIAKMFVDGKFTTPKI

SNPs (tot: 73)

Position	A %	C %	G %	T %	Probability
383	16	83			0.994512
385		16		83	0.994512
387	16		83		0.994512
390	83		16		0.994512
421	85	14			0.993533
426	85		14		0.993533
428		85	14		0.993533
429	14			85	0.993533
431		14	85		0.993533
432		85		14	0.993533
433		85		14	0.993533
435		85	14		0.993533
438	85		14		0.993533
440		14	85		0.993533
454			12	87	0.992554
455			87	12	0.992554
459	87			12	0.992554
460		87	12		0.992554
463	87			12	0.992554
469	87	12			0.992554
470	12		87		0.992554
472		11	88		0.923564
475		11		88	0.923564
476			11	88	0.923564
478			11	88	0.923564
479	11		88		0.923564
480		11	88		0.923564
481	80	20			0.999996
482			90	10	0.90298
485		90	10		0.90298
487			80	20	0.999996
489	90			10	0.90298
492	90	10			0.90298
495		10	90		0.90298
497		10		90	0.90298
501	10			90	0.90298
503		90		10	0.90298
504	90	10			0.90298
511		80	20		0.999996
560	27	72			1.0
660		88	11		0.923564
670		11		88	0.923564
683		42	57		1.0
706	87			12	0.992554
707		87	12		0.992554
709	87	12			0.992554
713	87		12		0.992554
714		87	12		0.992554
717	87			12	0.992554
718			12	87	0.992554
720		12	87		0.992554
721	12		87		0.992554
724	12		87		0.992554
793		83		16	0.994512
801	42	14	14	28	1.0
802			71	28	1.0
803	14	28	57		1.0
805	21	14		64	1.0
806		28	14	57	1.0
808	57	28			1.0
809	85			14	0.999981
810		14	14	71	0.999974
811			85	14	0.999981
813	14			85	0.999981
814			14	85	0.999981
817	15			84	0.999986
991		92		7	0.999532
996			7	92	0.999532
998	92	7			0.999532
1001	92		7		0.999532
1003	92			7	0.999532
1004	92		7		0.999532
1056	94			5	0.998894

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain