SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5812

Length: 1233 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5812

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to FLA21 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21 PRECURSOR) n=1 Tax=Vitis vinifera RepID=UPI0001984640	-	-	1.0e-31	32%
FL-Next	sp=Fasciclin-like arabinogalactan protein 21; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	25%
Blast2go	fasciclin-like arabinogalactan protein	-	-	1.30449e-35	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9FL53

Fln msg: your sequence is shorter than subject: 330 - 353

Fln protein: LPPTSCTFFALSDDALNNLTLPSWLMMDLLHYHTSTHKLLWKTLSAMQLGSCIPTLLHGKNLVVTSNENGSVAINGVPVARPDLYTRGTFAIHGVAQPFFNPNASETSLETLIVTPCSKALLTHTPNHNLRAPPPTSPPQPQHFHRPPTPTDNLVPQSPPAPPAEDDDSDSDSHDLGVKVSWFKIQELLRSNGYISFSVAMQLEEMDLILAKDQNNVSHVTVFAPTDQNFAYVASSSSLLAAMIRFHVVPTRLRFSDLLRLPVGSGLPTLLPGRRLYITGAYDAEHPLTINNVPIVHPDVYSTHEVVVHGIFRPFNLFNITANSTTTEH*

Protein Length: 331

Fln nts: GCTGCCGCCCACAAGCTGCACGTTCTTCGCCCTCAGCGACGACGCCCTCAATAATCTGACGCTCCCATCGTGGCTCATGATGGACCTCCTCCACTACCACACCTCCACCCACAAGCTTCTCTGGAAAACGTTGTCCGCCATGCAGCTCGGCTCCTGCATACCCACGCTGCTCCACGGCAAGAACCTTGTGGTCACGAGCAACGAGAATGGGAGCGTGGCCATCAATGGAGTGCCCGTCGCTCGCCCCGATCTCTACACCCGAGGCACCTTTGCCATCCACGGCGTGGCCCAGCCATTCTTCAACCCAAATGCCAGCGAGACGAGTCTGGAGACGCTCATCGTCACCCCCTGCTCCAAAGCTCTGCTCACGCACACGCCCAACCACAACTTGAGAGCGCCACCGCCAACGTCACCGCCGCAGCCGCAGCACTTCCACCGTCCGCCCACGCCCACCGACAACCTGGTACCGCAGTCGCCGCCGGCGCCGCCCGCCGAAGACGACGACAGCGACAGTGACAGCCACGATCTTGGAGTTAAGGTATCGTGGTTCAAAATCCAAGAATTGCTGCGCTCCAACGGCTACATATCATTCTCTGTGGCCATGCAGCTGGAGGAGATGGACCTGATCCTGGCCAAGGACCAGAACAACGTCAGCCACGTCACCGTGTTTGCTCCCACCGACCAGAACTTCGCTTATGTGGCGTCCTCGTCATCTCTCCTGGCGGCCATGATCCGCTTCCACGTGGTGCCGACTCGGCTGCGTTTCAGTGACCTGCTACGACTTCCTGTGGGTTCGGGACTCCCAACTCTTCTCCCCGGGCGCCGCCTGTACATCACCGGGGCTTACGATGCCGAACATCCCCTCACCATCAACAACGTTCCGATTGTCCATCCCGACGTCTATTCCACGCACGAGGTCGTTGTCCATGGGATCTTCAGGCCCTTCAATCTGTTTAACATAACGGCCAACTCTACTACTACTGAACATTGA___CAATGACTGTACATTGAATTGAAAATGACTATCTCTCTCTCTGTATATTGAATATGACATCTCTCCCTGTATATTGAAATATGACTTATCTCTCCCTGTAGAGTGTACATTGAAAACTGAGATTCACACATTGGGTATCCATAGATATATGGGTTTAATTGTCTTTCTCATTTCTGAACTTCCATAGCTGGATCTTGAAATTCTGTATATATCACCATATCAAGAAACTCAGATAAAGATTT

Fln Alignment:

Contig5812___TFFALSDDAL-NNLTLPSWLMMDLLHYHTSTHKLLWKTLSAMQLGSCIPTLLHGKNLVVT--SNENGSVAINGVPVARPDLYTRGTFAIHGVAQPFFNPNASETSLETLIVTPCSKALLTHTPNHNLRAXXXXXXXXXXHFHRPPTPTDNLVPQXXXXXXXXXXXXXXXXXXLGVKVSWFKIQELLRSNGYISFSVAMQLEEMDLILAKDQN---NVSHVTVFAPTDQNFAYVXXXXXXXXXMIRFHVVPTRLRFSDLLRLPVGSGLPTLLPGRRLYIT--GAYDAEHPLTINNVPIVHPDVYSTHEVVVHGI
Q9FL53______________TLFAIEDASFFNTSSLHPLFLKQLLHYHTLPLMLSMDDLLKKPQGTCLPTLLHHKSVQISTVNQESRTAEVNHVRITHPDMFLGDSLVIHGVIGPF---SPLQPHSDHLIHTPLCQSDTTNKTSNN--------------------------------------------EEVPVSIDWTRIVQLLSSNGFVPFAIG--LHSVLNRIVNDHNHHKNLTGVTILA--TPNLVSLSSASPFLYEVVRHHILVQRLTYKDFASMSDKATVKTLDPYQDLTITRRNVNSSGGDFMISGVEIVDPDMFSSSNFVIHGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain