SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5796

Length: 1257 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5796

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNR6_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	uncharacterized protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1336	IPR009769	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQU3

Fln msg:

Fln protein: MSRGKKVQADWKEQVRKSGPLREVNPDTGVNGWSSPSGDVFSVRGAEYFSQKQKVPAGESLMKPLGMDWLRSSAKLDHVLARRDNRTMAALRRAQGEGRALKAFVFAVNLQVPGREQQHSAVFYYATEDPIPPGSLFHRFVHGDDAFRNSRFKLLSRIVKGPWIVRAAVGNHAACLLGKALTCRYHRGGNYLEIDVDIGSSALASSIIHLALGYVTSVSVNMAFMVESQAEEELPERVLGAVRIQQIEMSSAVYVDAVPTNNADRTPGGCRLERRKPSWCLRGHGSAKVEDDGKH*

Protein Length: 297

Fln nts: GAGAACCAAAAGAAGAATTCTACGATGAGAAGTGGGCAGCGCACTTTGCTTCCAATTATGCGTTTCTGGTCGGCGGACTTTGCTTGCAACGATACATTTCCGGTTACTCCACTCCATAAAAACAGAGATATCTGTTGGTGAGAATCGAACAAGAGGCCTGaGTGAGAGAGCC_-_ATGTCAAGGGGCAAGAAGGTTCAGGCGGACTGGAAGGAGCAAGTCCGGAAGTCAGGGCCACTCCGAGAAGTGAATCCAGACACGGGCGTCAATGGCTGGTCATCGCCCAGCGGCGATGTGTTCTCAGTACGTGGCGCCGAGTATTTCAGCCAGAAGCAGAAGGTTCCGGCAGGGGAGTCGCTGATGAAGCCTCTGGGCATGGACTGGCTACGCTCCTCGGCCAAGCTCGACCACGTGCTCGCGCGCCGGGACAACCGTACAATGGCTGCCCTCCGCCGTGCCCAGGGTGAAGGCAGAGCGCTGAAGGCTTTCGTGTTCGCTGTGAACCTGCAGGTGCCCGGGCGGGAGCAGCAGCACAGCGCGGTGTTCTATTATGCGACCGAGGATCCAATCCCACCGGGGTCTCTTTTCCACCGCTTCGTGCACGGGGACGACGCCTTCCGCAACAGCAGATTCAAGCTCCTGAGTCGGATTGTGAAGGGGCCCTGGATCGTGCGGGCCGCGGTGGGGAACCACGCGGCGTGCCTGCTGGGGAAGGCCCTAACCTGTCGCTATCACAGAGGGGGAAATTATTTAGAAATTGATGTCGACATTGGCTCTTCGGCGCTCGCGAGCAGTATAATTCACCTCGCCCTCGGTTATGTGACCTCCGTCTCGGTGAACATGGCGTTCATGGTGGAGTCTCAGGCGGAGGAAGAATTGCCTGAGCGGGTCCTTGGGGCCGTTCGGATTCAGCAGATCGAAATGTCTTCTGCCGTATATGTTGACGCCGTCCCCACAAACAATGCTGACAGAACCCCCGGAGGTTGCAGGTTGGAGAGGCGTAAGCCCAGCTGGTGTCTGCGGGGCCACGGCTCCGCGAAGGTCGAGGACGATGGGAAGCACTGA___ACTCGTTCCTTCAAAATGTGTTGCAGGGGTTTGGTAAATTCAAGAAGGTTTTCTGGTAAATCTGCAAGCGAAGCGCCGGAACCCCTCTGGTCACATGCAAGCGAAGGGCCGGAACCCTTCTGATCACATGTATGGGCTGTCATCTGTATACTGAATCTAACAGTTAACGGTGATGCCTCTTTATAATTTTTATTTTA

Fln Alignment:

Contig5796___MSRGKKVQADWKEQVRKSGPLREVNPDTGVNGWSSPSGDVFSVRGAEYFSQKQKVPAGESLMKPLGMDWLRSSAKLDHVLARRDNRTMAALRRAQGEGRALKAFVFAVNLQVPGREQQHSAVFYYATEDPIPPGSLFHRFVHGDDAFRNSRFKLLSRIVKGPWIVRAAVGNHAACLLGKALTCRYHRGGNYLEIDVDXXXXXXXXXXXXXXXXYVTSVSVNMAFMVESQAEEELPERVLGAVRIQQIEMSSAVYVDAVPTNNADRTPGGCRLERRKPSWCLRGHGSAKVEDD
B8LQU3______________MSGDRKVQ-DWKEQVRKSGPLREVNPDKGVDGWSSPVGDVFSVRGADYFSKRQKIPSGEWMMKPLGMDWLRSSARLDHVLARPDNRAMATLRRAQGEGRALKAFVFAVNLQVPGREQQHSAVFYYATEDPIPPGSLLYRFVHGDDAFRNSRFKLLNRIVKGPWIVRATVGNHAACLMGKALTCRYHKGDNYLEIDVDIGSSALASAIVHLALGYVTSVSVDIAFMVESQSDEELPERLLGAIRIHQIEMSSALYVDPSPINNADKTLGGGGFEWRKRGRGLRGHGSGKVEDE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
826	16	83			0.994512
828		83	16		0.994512
838	16		83		0.994512
865		16	83		0.994512
869	16		83		0.994512
870	83	16			0.994512
923	16			83	0.994512
924	16	83			0.994512
928		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain