SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5772

Length: 1066 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5772

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like n=1 Tax=Medicago truncatula RepID=Q2HW32_MEDTR	-	-	71%
FL-Next	sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	topless-related protein 3	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	endomembrane system	GO:0012505	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q84JM4

Fln msg: your sequence is shorter than subject: 284 - 1108

Fln protein: RRDLGCHSGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRIDEVKTKLKGHQKRITGLAFSSTQNILVSSGADAQLCVWNTETWEKRKSKTIQMPVGKTVSGDTRVQFHSDQLHILVVHETQLAIYDAYKLERQCQWVPQDALSAPILYATYSCNRQLIYATFSDGNIGVYDAEILRLRCRIAPTAYLSPGTSSSTSLPLVVAAHPHEPNQFAIGLSDGAVQVLEPSESEGKWGVSLPSENGAVPAVVAGPSTSNQGSEQAPR*

Protein Length: 285

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAAAGTATCTTTATTCAACATGATGACATTTAAGGTTATGACTACTTTCATGCCCCCACCCCCAGCATCAACGTTCTTAGCATTCCATCCACAGGATAACAATATCATAGCTATTGGAATGGAAGATTCAACTATCCACATATATAATGTTAGGATAGATGAGGTTAAAACTAAGTTGAAAGGACATCAGAAGAGAATCACAGGTCTTGCCTTTTCCAGTACGCAGAACATTCTAGTGTCTTCAGGTGCAGATGCACAGCTCTGTGTATGGAACACAGAGACATGGGAAAAGCGTAAGTCGAAGACTATCCAGATGCCAGTTGGAAAGACAGTTTCTGGTGATACACGAGTTCAATTTCATTCTGACCAGCTTCATATACTTGTTGTGCATGAAACACAACTTGCCATATATGATGCCTATAAATTAGAACGACAATGCCAGTGGGTGCCACAAGATGCTCTTTCAGCACCAATATTGTATGCAACATATTCATGTAATAGGCAACTTATTTATGCGACATTCAGTGATGGTAATATTGGTGTATATGATGCTGAAATACTTAGGTTAAGATGCCGCATAGCCCCAACCGCCTATTTAAGTCCAGGGACTAGCAGTTCTACCTCTTTACCCTTGGTTGTTGCTGCACACCCTCATGAACCAAATCAGTTTGCCATTGGATTGTCTGATGGAGCAGTTCAAGTACTTGAACCATCTGAGTCTGAAGGAAAATGGGGGGTTAGCCTACCTTCAGAAAATGGAGCAGTGCCCGCTGTGGTTGCTGGTCCGTCAACTAGCAACCAAGGCTCAGAACAAGCTCCAAGATGA___TCATATCTTGTGTAATAGGTTGTAATTTGTTCATCTGGCTCTTTTCTTGCTGACTAGTAAGAATTTTCTATTTTTCTCTCTATATCCACAATCCCTTTGTTCAACTTTGTTTAAATTCAATGTCTGTACAAATATTTGTCACTGCTGATTGTATATTCTTTCAATAGACAAGCCACCAAAAGGATAAAACAGGTGATCTCCAGTGCATGTATTT

Fln Alignment:

Contig5772___GKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRIDEVKTKLKGHQKRITGLAFSSTQNILVSSGADAQLCVWNTETWEKRKSKTIQMPVGKTVSGDTRVQFHSDQLHILVVHETQLAIYDAYKLERQCQWVPQDALSAPILYATYSCNRQLIYATFSDGNIGVYDAEILRLRCRIAPTAYXXXXXXXXXXXXXVVAAHPHEPNQFAIGLSDGAVQVLEPSESEGKWGVSLPSENGAVPAVVAGPSTSNQGSEQAPR
Q84JM4______________GKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMPAGKAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAY--LPQGNQGLSPLVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSE-----AINSPSTTSNQTPEQLQR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
607	14		85		0.993533
612	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain