SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5767

Length: 1284 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5767

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase domain-containing protein [Arabidopsis thaliana] gb\|AAD30630.1\|AC006085_3 Similar to protein kinases [Arabidopsis thaliana] gb\|AAG50535.1\|AC079828_6 serine/threonine protein kinase, putative [Arabidopsis thaliana] dbj\|BAF01247.1\| putative s	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	kinase family protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	60%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAS fold-3	IPR013655	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 266 aas, putative chimeric sequence, your sequence is shorter than subject: 109 - 385

Fln protein: MAGLRPVKVVGRGAMGTVFLAQGQDCEKPALAMKVMSKPIMEKKSDGLKRARTEREILSGLRHPFLPELMGYVETDKIVAWVMDYCPGGDLNALRHRQAEEDVFRIHH*

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGAGAAAATCGGATGAGGATGTCCGTAATTCGGAGGATGTGGGGATAGAATCG_-_ATGGCGGGGCTGCGGCCCGTGAAAGTGGTTGGCAGGGGCGCCATGGGGACTGTGTTTTTGGCCCAGGGTCAAGACTGCGAGAAGCCTGCGCTGGCCATGAAGGTTATGAGCAAACCTATCATGGAGAAAAAGAGCGATGGATTGAAGAGAGCGCGCACGGAAAGAGAAATACTGTCCGGGCTTCGGCATCCCTTTTTGCCTGAATTGATGGGGTACGTGGAGACAGACAAGATTGTTGCCTGGGTTATGGATTATTGCCCCGGAGGGGATCTTAATGCGCTCAGGCATCGCCAGGCCGAAGAAGATGTTTTCAGAATCCACCATTAG___GTTTTATGCAGCAGAGATTGTGCTAGCCTTGGAACATCTGCACAGCCTGGGCGTGGTGTACAGAGACCTGAAGCCTGAGAACGTTTTAATTCAGTCCAATGGCCATATAATGCTCACGGATTTCGACCTCTCGACCAGGCTTCCGCCTCAGGGGTCGTTATCAGCTGACAATGTCGACCAAGAACAAGAAAACGAACCTTCCCAGCAACGCGCATCCCTCGGCTGCCTGATCCCGAAAAACTGCGTGATCCCGCAAAACGCGAAAAGCAAGAAGGGCAGGCGACCGAACACGGCCCGGGTTTCCCCCGTGGTCAAACCTAGGAAGGGCACCAGCCCTAATGCAGCTGCTTCTTCTTCTCCTACTCCTTCTGTTTGCGGCCAGAAGCTGAATTCCTTCGTGGGCACGGAAGAGTACGTTTCTCCCGAAATGGTGAAGGACGCAGGCCACGACTTCCGCGTCGATTGGTGGGCGCTCGGGATTCTGCTATATGAAATGCAGTATGGAAAAACGCCATTCAAGGGCGCCACAAGAAAGGAAACCTTCTATAAGATCCTTGTCCAGAACCCCGAATTCATGGGACCCTGGACGCCATTGCGCGACCTCATTCTCAAATTGCTGGAAAAGGAGCCGGAAAAGAGATTGGCGTCGGCCCGCAACATTAAATCGCATCTCTTCTTCAGAGGTCTAAATTGGGACGCTGTACCCCACATACCTCGAGCGCCCTACGTTCCCCCACCCGTCTCTCACGAGGATTTGAGTTCATTGAAAACGTTAGATATCGAACAATACATTCATAAAGAAGCAGACCCAAAGGAAGATGACAAGGATAATAGGGCTCCAACATCGCCCAAAGAAGGTGAGACCAATGATTTTGGT

Fln Alignment:

Contig5767___ESMAGLRPVKVVGRGAMGTVFLAQGQDCEKPALAMKVMSKPIMEKKSDGLKRARTEREILSGLRHPFLPELMGYVETDKIVAWVMDYCPGGDLNALRHRQAE
A9NPF9______________QSVDEFTPIRTLGHGDMGTVYLAKHMTSGKP-VAMKVMSKELMQKKRSH-KRAWMEKEILQKLDHPFLPKLFTKFESKNHSFLLMSYCSGGDLNTLRQRQKD

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
177	20		80		0.995493
292	80		20		0.995493
384	50		25		0.995533
385	25		50	25	0.995533
386	75			25	0.996473
387	66	33			0.997452
389	66	33			0.997452
1052	83	16			0.994512
1054	83	16			0.994512
1055			16	83	0.994512
1058	16		83		0.994512
1060		16	83		0.994512
1062		83		16	0.994512
1067		83		16	0.994512
1069		83		16	0.994512
1070	83	16			0.994512
1073	83			16	0.994512
1074		16		83	0.994512
1075	16			83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain