SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5763

Length: 937 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5763

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Orai-1 domain containing protein	-	-	5.0e-23	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	protein	-	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transport	GO:0006865	Biological Process	60%
Blast2go	transmembrane transport	GO:0055085	Biological Process	60%
Blast2go	membrane	GO:0016020	Cellular Component	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Calcium release-activated calcium channel protein	IPR012446	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX11

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 21 aas, your sequence is shorter than subject: 253 - 311

Fln protein: MASTFGDVARAVLTSFDSSMNNVWREEENEWHTEEEQWRRQDLLWMNWQRLRWHSERHLRNLKYRWREEDMVQRNLDNARCLWLRYVERNRRDVEEKSEQLRAISNLAAIFAGFAIVTLTQFNVQEKNSLVLVGLYGILTALVEGLMTISMVTCTLILGCILKIGKTYVSEQAEEEFIFQCYEFCKNFEEGDHPPCPRRTMETFWECRCESSWQWAFFVFFRGFSLPFKFDCDRVFNTLFLEQICKEDTTNR*

Protein Length: 254

Fln nts: ATGGGGAGAGACAGACGAACAACCATAGAGAAGAGAACAAAAGTAGAGAATGAGCGTATATGTTTTGAAGGAAG_-_ATGGCAAGTACATTTGGGGATGTTGCACGGGCAGTGCTGACGTCATTCGACAGTAGCATGAATAATGTGTGGCGGGAGGAGGAAAATGAGTGGCATACCGAGGAGGAACAATGGCGCCGACAAGACCTTCTATGGATGAATTGGCAGAGGCTTCGATGGCACTCCGAACGCCATCTCCGAAATTTGAAATACAGATGGCGGGAGGAAGATATGGTACAACGAAACTTGGATAATGCTCGTTGCCTATGGCTAAGGTATGTAGAGAGGAACAGAAGGGATGTAGAAGAGAAATCTGAACAGCTAAGGGCTATCTCAAACTTGGCAGCAATTTTTGCTGGATTTGCAATTGTTACATTGACTCAATTTAATGTCCAGGAGAAAAATTCACTGGTTTTGGTTGGCCTATATGGCATTCTAACCGCTCTTGTTGAGGGGTTGATGACAATATCAATGGTAACATGTACATTAATACTTGGATGCATTCTTAAGATTGGGAAGACTTATGTCAGTGAACAGGCTGAAGAGGAATTTATATTCCAATGTTATGAATTTTGCAAGAATTTTGAGGAAGGAGATCACCCTCCATGTCCCAGGAGGACGATGGAAACCTTTTGGGAATGCAGGTGTGAATCAAGTTGGCAGTGGGCATTTTTTGTTTTCTTTAGGGGTTTCTCTCTTCCTTTTAAGTTTGACTGTGATAGGGTGTTTAATACATTATTCTTGGAGCAAATATGTAAGGAAGACACAACTAATAGATGATAGGAATGATCTTCTTGGAGATCCTTCAGGTCTTCCTTATGACTGGTACCTTGCACCTAACATCAGGGCAACACAATAACAATTTCTGAAAGACACAAATGTGA

Fln Alignment:

Contig5763___ASTFGDVARAVLTSFDSSMNNVWRXXXXXXXXXXXQWRRQDLLWMNWQRLRWHSERHLRNLKYRWREEDMVQRNLDNARCLWLRYVERNRRDVEEKSEQLRAISNLAAIFAGFAIVTLTQFNVQEKN-SLVLVGLYGILTALVEGLMTISMVTCTLILGCILKIGKTYVSEQAEEEFIFQCYEFCKNFEEGDHPPCPRRTMETFWECRCESSWQWAFFVFFRG
A9NX11______________SSSAMDMGQMLLTAFDTSMSKYWREEDRRWRAEDRTWREDDLNYREEERQWRVQEQFMREAEIKWRLEDMEQRHIDNARYLWTRFVEKNRRDVEEKSEQLKAISNLAALFAGFAVVTLTQFTFQQNEVSIIWIAFYGVFTAIAVGLMTIAMVTCTLILGSILKNGKSYVNEVAEEDFMFKCHTFVESYQIGHRPPFPRRTFENFWDIRCEDDWRRAFQMYALG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
932	70		10		0.999998

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain