SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5761

Length: 1523 nt

Origin of reads: Inia v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5761

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02704, GASA, Gibberellin regulated protein	-	-	2.0e-31	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	gibberellin-regulated protein 2 precursor	-	-	4.70973e-18	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	4.70973e-18	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN51

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 77 - 108

Fln protein: SSSSESLRIWIVLFNADCNAACERRCAKASRHKMCLRACGACCARCNCVPPGTSGNEDTCPCYATITTHGRRHKCP*

Protein Length: 78

Fln nts: AGCTTAGTATCTGGATATGCAGCAGGCTTTCGCCTTTTCATCCTCTTGTGTCCGAACATAATACATATTGATTATTTTTCGATTCTACACATACTTCATTTGGGTAAGAGCAGCTTCCATGGCTTCCGCTAGCAGGCTGTTTGTCATATATTTTGTGACGATACTTCTTGTACAGAGCTATGTACAAATTGCTGAGAGTGGAGCTTCCACAGTAGTTGCGGTGAGTATATATGCAGCGCTGATTAAGTTATCACATTGATATTATTCATTCATAGGTGGAATTCTAATCATAGATTATTAATAGAAGTAGGTGGCCCAATTTTACATATACTGAACTAATCATATTGTCGTTTCCCTTTCCTCTGGTGCCAGTCGCAAGAAAGCGAGATTAACAGGAGGGTCCCAAAGACCATAGGTATAATATGTATAATATGTTCTAAATGCCATACGTTGCGTCGTCAATAATTGTTATTGCTGCTGCTGTCAATAATTGTTATTCTTATTTGTTATTGTCGTAATCTATTCATTTGAATTTTGGTTGTTACTCTACTGCTCCATCCTTTCTTAACATCAGTTCAACGTTCAGTTTGGACATCACTTGTTATTCTTAACATCAGTTAACCGTTCAATCTGGACATAATTTGTTATTGTTGGTCTCGATTCAATATTTTCTTGAACTGAATTCAAAGCTTATTTTAACATCAACGTTACTATTCTTGTCAGAGTGAACGTTACTATTCTTGTCAGAGTGGTTCTAGTATTAGATTTTTTTATCAAGTTATTGAAATATGATCATTTTTTCTATAAAAATTAGATAAAAGAATGGTATGTTTATAGGTTTCTACTCATCTAATGTGCTTATTCAAGATATGAATCACAGAAACCTGAATGGTAAAATCTATTCCATTTTTGATAATTTATGAATCTATTCAATTTTTGATAACTTTTTTCTAAAGTTGAAGCTCATCTTCAGAATCATTACGTATTTGGATTGTTTTGTTTAACGCAGATTGCAATGCAGCTTGTGAAAGAAGATGCGCAAAAGCATCCCGCCATAAAATGTGTTTAAGAGCTTGCGGTGCATGCTGTGCGAGGTGCAACTGTGTTCCTCCCGGTACATCTGGAAACGAGGATACATGCCCCTGCTATGCCACCATAACAACACATGGCCGGAGACACAAATGCCCTTGA___GAATATGATATATGCATGCATTATATTTATGCAGTGATATATACGTATGTTGTATTTGCGATTTGACCGTCAAACTTTCAGATATTAGTTGGTATTATAGGTATTTATACATGGAAATATATAAATGTATACAAATAAATGTATCCCATGCTTTGATGAGCGTGGCAGATGCATATTCAGTTTATCTTCGTCGGAAAATGTATGGTCAGTGTCACAGATATTGAATAAGATATATAATCATTGGATGCATCTCTATACTCTTTTCTCCATGAATACCTGGTTATTATTTCAGGGATGGGTACTACAAATATGGGATAGGTGCTACAAATATT

Fln Alignment:

Contig5761___VLFNADCNAACERRCAKASRHKMXXXXXXXXXXXXXXVPPGTSGNEDTCPCYATITTHGRRHKCP
A9NN51______________LLQTIDCNAACGERCTKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYASLKTHGNRPKCP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1278		3		96	0.99245
1439	13		86		1.0
1440	5	94			0.998578
1442	10			89	1.0
1443	11	88			1.0
1444	11	3		85	1.0
1445	11	81		7	1.0
1448	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain